LOC113546407


Basic Information

Item Value
gene id LOC113546407
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 11297868 ~ 11302844 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU95853
TGGACGCAACCTGTTGTCCCTCCCACTAGTCACCAGCACGCTGTATAAGGAAGGGCACATACATATAACTGCTACTACTGGTTATCTGATCTTAAAGGACAATGTCGAGCATAGCTGCTGCTAGTGTGGAGCCCACAGCTACTGAGGAGAAGAAGCCACTGAAGCCGTGCTGTGCATGCCCTGAAACTAAAAAAGCAAGGGATGCCTGTATAATTGAAAAGGGTGAAGAAAACTGCACAGATCTTATCGAGGCTCACAAAGAGTGCATGAGGGCACTTGGTTTCAAAATATAATTGCAAAGGACTGGATTGTGAGgatgaCCTGGACTGTGGTGGGGTGTGTGGACTACTATTTATACTATTATGCTGTGagaagattttgtttttttcagttgttccTCTGAATGTGTTGTATTCTTagttttgtgtgaatgttgcAAATTGATTTTGAATAAACA
>XM_026946272.2
CATACTAGCATACTAAACAGTATGCTAAAACCTGTCCTGTCGCACTACTTTGGCATGCTATGTAGTACGGTAGTATGCGGTTTGGACGCAACCTGTTGTCCCTCCCACTAGTCACCAGCACGCTGTATAAGGAAGGGCACATACATATAACTGCTACTACTGGTTATCTGATCTTAAAGGACAATGTCGAGCATAGCTGCTGCTAGTGTGGAGCCCACAGCTACTGAGGAGAAGAAGCCACTGAAGCCGTGCTGTGCATGCCCTGAAACTAAAAAAGCAAGGGATGCCTGTATAATTGAAAAGGGTGAAGAAAACTGCACAGATCTTATCGAGGCTCACAAAGAGTGCATGAGGGCACTTGGTTTCAAAATATAATTGCAAAGGACTGGATTGTGAGgatgaCCTGGACTGTGGTGGGGTGTGTGGACTACTATTTATACTATTATGCTGTGagaagattttgtttttttcagttgttccTCTGAATGTGTTGTATTCTTagttttgtgtgaatgttgcAAATTGATTTTGAATAAACATCCTATGCAATTCTATGGAATTTCA
>XM_026946282.2
TTTCAAACTTGGCTCCTCCTTCCGGCTGCTGGCGGAAACGCAAACTGCAAATAAAGGTCTCACAAAAGACAAGCAATAACCATCTCTGATCTTAAAGGACAATGTCGAGCATAGCTGCTGCTAGTGTGGAGCCCACAGCTACTGAGGAGAAGAAGCCACTGAAGCCGTGCTGTGCATGCCCTGAAACTAAAAAAGCAAGGGATGCCTGTATAATTGAAAAGGGTGAAGAAAACTGCACAGATCTTATCGAGGCTCACAAAGAGTGCATGAGGGCACTTGGTTTCAAAATATAATTGCAAAGGACTGGATTGTGAGgatgaCCTGGACTGTGGTGGGGTGTGTGGACTACTATTTATACTATTATGCTGTGagaagattttgtttttttcagttgttccTCTGAATGTGTTGTATTCTTagttttgtgtgaatgttgcAAATTGATTTTGAATAAACATCCTATGCAATTCTATGGAATTTCA
>XM_026946291.2
TGCTTTGATAACTCTTAATAATCGCAAATCTGATTTCATTAAGCAGTTCAATTGCTGGAGCTCAGAAGCGGAAGTAGTAGTCCGTGTAACGTGTTATTTTAAAGCAGTTGCTAGCTAACTATCATTAGTAGCATTAGAGCTGATCTTAAAGGACAATGTCGAGCATAGCTGCTGCTAGTGTGGAGCCCACAGCTACTGAGGAGAAGAAGCCACTGAAGCCGTGCTGTGCATGCCCTGAAACTAAAAAAGCAAGGGATGCCTGTATAATTGAAAAGGGTGAAGAAAACTGCACAGATCTTATCGAGGCTCACAAAGAGTGCATGAGGGCACTTGGTTTCAAAATATAATTGCAAAGGACTGGATTGTGAGgatgaCCTGGACTGTGGTGGGGTGTGTGGACTACTATTTATACTATTATGCTGTGagaagattttgtttttttcagttgttccTCTGAATGTGTTGTATTCTTagttttgtgtgaatgttgcAAATTGATTTTGAATAAACATCCTATGCAATTCTATGGAATTTCA
>XM_034304678.1
TAGAAACGCATCATGATACTAATGTTATGTACTGTTAGTGAATTCTGTGTTGCGCAGTTGACCTTAGTGTAATTAAGGGTCACGCACATGCGCACTTGGCCAATATGGCCATGCGTACATTTATTTGACTGATCTTAAAGGACAATGTCGAGCATAGCTGCTGCTAGTGTGGAGCCCACAGCTACTGAGGAGAAGAAGCCACTGAAGCCGTGCTGTGCATGCCCTGAAACTAAAAAAGCAAGGGATGCCTGTATAATTGAAAAGGGTGAAGAAAACTGCACAGATCTTATCGAGGCTCACAAAGAGTGCATGAGGGCACTTGGTTTCAAAATATAATTGCAAAGGACTGGATTGTGAGgatgaCCTGGACTGTGGTGGGGTGTGTGGACTACTATTTATACTATTATGCTGTGagaagattttgtttttttcagttgttccTCTGAATGTGTTGTATTCTTagttttgtgtgaatgttgcAAATTGATTTTGAATAAACATCCTATGCAATTCTATGGAATTTCA

Function

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0006825 copper ion transport biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0016531 copper chaperone activity molecular_function

KEGG:

id description
K02260 COX17; cytochrome c oxidase assembly protein subunit 17

RNA

RNA id representative length rna type GC content exon number start site end site
TU95853 False 457 lncRNA 0.43 4 11297893 11301458
XM_026946272.2 True 564 mRNA 0.42 4 11297868 11301540
XM_026946282.2 False 482 mRNA 0.42 4 11297868 11302844
XM_026946291.2 False 536 mRNA 0.40 4 11297868 11301348
XM_034304678.1 False 525 mRNA 0.41 4 11297868 11301115

Neighbor

gene id symbol gene type direction distance location
popdc2 popdc2,LOC107712266,LOC107569269,LOC107597374 coding downstream 3346 11290394 ~ 11294522 (-)
wars2 wars2,LOC107712263,LOC107658241 coding downstream 58057 11224354 ~ 11239811 (-)
tbx15 tbx15,LOC107724509,LOC107712261 coding downstream 76925 11201456 ~ 11220943 (-)
gdap2 gdap2,LOC107668848,LOC107658195 coding downstream 168967 11108614 ~ 11128901 (-)
LOC113526121 LOC108266494 coding downstream 300043 10994049 ~ 10997825 (-)
sap18 sap18,LOC107597378,LOC107668906,LOC107569214 coding upstream 7640 11310484 ~ 11312221 (-)
il17d NA coding upstream 71592 11374436 ~ 11376063 (-)
ift88 ift88 coding upstream 73352 11376196 ~ 11391842 (-)
zmym2 zmym2 coding upstream 123987 11426831 ~ 11447683 (-)
aff3 aff3 coding upstream 159007 11461851 ~ 11481583 (-)
G80655 NA non-coding downstream 202261 11094513 ~ 11095607 (-)
G80658 NA non-coding downstream 280185 11016762 ~ 11017683 (-)
G80608 NA non-coding downstream 314513 10980392 ~ 10983355 (-)
G80604 NA non-coding downstream 321600 10976041 ~ 10976268 (-)
G80601 NA non-coding downstream 325897 10971311 ~ 10971971 (-)
G80972 NA non-coding upstream 257536 11560380 ~ 11560586 (-)
G80988 NA non-coding upstream 299064 11601908 ~ 11602158 (-)
G80995 NA non-coding upstream 342547 11645391 ~ 11645986 (-)
G81012 NA non-coding upstream 384137 11686981 ~ 11687242 (-)
G81014 NA non-coding upstream 385691 11688535 ~ 11689968 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other downstream 262307 11018279 ~ 11035561 (-)
G80600 NA other downstream 326711 10969417 ~ 10971157 (-)
LOC113526229 nxpe3 other downstream 683581 10595440 ~ 10614287 (-)
si:dkey-83m22.7 NA other downstream 1643413 9632685 ~ 9654455 (-)
G79826 NA other downstream 1728748 9568555 ~ 9569120 (-)
mphosph8 mphosph8,LOC107658258 other upstream 147368 11450212 ~ 11460325 (-)
irs2b irs2 other upstream 1179817 12482661 ~ 12507688 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other upstream 1410221 12713065 ~ 12728037 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other upstream 1888870 13191714 ~ 13250548 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other upstream 2459573 13762417 ~ 13855186 (-)

Expression


Co-expression Network