G81220


Basic Information

Item Value
gene id G81220
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 12041634 ~ 12045475 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU96413
ATTTTAATGACTAAACAGGAGGTGTGTGCAGAGAAGAGGCAATTAATGAAAAGATTATTAAGGATTTTGGTTTTATACAAAATACTGTAATTGTTTTTGACTGTCATCGTGtctcaatggttaaggctctgggttactgatcagaaggttgagagtttaagccccagcactgccaagtgccactgttgggctcttgagcaaggccttacccctctctgctccagggttgctgtatcatggctgaccctgcactctgacccctaACTTCCTAACAAACtgagatatgtgaagaaaagaatttcactctcCTGTAaagtatatgtgacaaattaaaaaaaaaaaaaaaaaggcttcttcTATTTCATATTCTATTTCATATGAAATGTCATGCTGCTGCAGAAGCCAGTAATGTGAGAGTGTCTGCTGAAGGCCATTCCTGGTGTCCCTGTGTTTGTTGGATAAGTGTAGAACTCTCTTCTGTCATTGTAACTCAAAGATGGACACCTCACACAAGCCTATGCTGCTGCCTTCTgatatctttctctttttttttttttttttttttaaagaagaaactTTTTCTTTGTCTAATGGGCTGTGAGGCATTAGGAGAGTGTCTGGCATGCAGCACTGGGCACAGAAATTTGAGACGATGACTACAGAGCAGCCGCTATGAGCTGTGTACCACCAGGGTAAACTTATCCGTGCCTGCTGAAAGCCACGGTTCTCCAACTTCACACAGACTGAAAGCACTTCAATTAGAGGCACACAAAGGAAGGGTAATGGAGTCTTACTACAAACTTGTAAGCATTTGCCCTGGATGTAATGCCAAGACACACTACAGTTCACTTTCCTGCAAATGTTGATTACTGCTTGCGTCATCCAGCAGCAAGCTCTGTCATAACTTGTCTGATTCTGATTTCGTGTACATGAGAGCTGACTCTTCTGtggtttatgtttttaatgGCAGCTCTGTTcttaaattctttaaatttaccaagatatttatttagcattcattcatcttcagtgaccaCTTTACCGgtactggtcagggtcatggtggttctGAAGCCTGTCCCAGAACACAACAATAGGATGAAACAAATCCTGCTGACTGGACTCAGCCAGGGCTTTAAAAGGTTTATCACAGCCCATCATGTTGTATTCTGTTTGACAAAATCTGCTGCATGTTTCAATGTAAAGAACTATTCTCACTTTATCTGCAGATATTCTGCTGTAGATACCTTTGATGCAAAAGAAGAGCACAGGACTATGGTGAAATctgataaatgacatttttgtcagtatgaataaaaaaaaattcccttgCAACCTTAtgacttggggaaaaaaattataacgtGTCTTCGTACATGAACATGTGTTTGCTGTCTGTATCCTTGAGGATCCTAACACAGCAGAAATCTGATTACCCCTAATGCCCCAAATTCAGCCCATTAAGGCTTTGATAAGTAGCTGAGGAGGTAAGAGGCATTATAGATGAGGCAGAATGCTAAACTCTGCAGGGACTGGAGTCTTattacagtcatgggaaaaagaaagtacaccctccttcaattctgtatttttatttagcagggcctaaataacaattgtgtggtcctgaGTAATTTCTGTAAACAAATagataacctcaggtgacaacaacaacaacaaaaaaaacacaacagatatGTCaatatgtagtatgtagtaaaCCATCATTCAGAAAACAGATGGGAAAACAATAAGCACAccatataattcagtaacatgtagaaccacttTTGGCAATAAGTTGAAGtagatgttttctgtaggagtttcaGTCCctcacattgttttggagactttttggcccactcttctttacagcattgcttcagttcattgttACTTGAGGGCATTCGTTTATGCACACCTCTCTTCCCATCACAGCgtctcagtggggttgaggtctggactttccAACACCttccaagacttttttttttttcttctttagccattcagatgtcaatttgctggtgtgcttgggatcgtTGTGCTGTCTCATGACCCAATGTCGaccttaagctgctggacagatggcctcacatttgtcccAAGAATATTCTGGTGTAAAGggagttcatcattgtctcaatgactgcaagtttcccaggtccagCTTGACTGTTGGTGTGAGGTGTTTATAGCGATaggctgtgtttggttttcatcaaacatggcactgtgcatgatgaGCAAACATCACCACCTTGGTCTTATCATTCCATGCATATTGTTCCAgaatttttgtggttttttagATACAATTCTGCAAATCTACATCATGCTGCCTTATTCtttttttggagagaaggactttttcctagccaccattccatgaaagccatacttgttctgtctttttttctgactgtgatctcatgaacataaacatttaatgtgcttacagagacctgtaggtcacatgatgtgggtcttttggttttatatataactcTGAGCGTTAAAAGGTCTGACCTTGAGCCTAATTTGATGGGAggcccactcctgggaagattggcaactgtcttgaaggctctccattagTAAACTATTCTTCTTACTGTATAATGgtaaatttcaaattgtttggagatggccttataacccttcccagattgatgagcagcaacagttgcttctctgtggtcatggctgatgtcctttcttcttggcatgatgtggACACACCCCTGAGTACttcagaacaccaaactgccaacaTTTCTGCTTATATAGAGGTAGTCGCTCTTCTTGATGGTTTTAGAAATaactggctgctaattactctcttaataattgtggaagtaggacgtgtgtacttatttttccccacttggtttctgaatgttggtttactttctggggaaaaatgactatatattgaaatctgttgtttttttgttgtcacctgaagttatttgtttgtttttagaagttggtgaggaccacacaattgttatttatcccctgataaataaataacatagaATTGTAGGGAGATGTCATTTCTTTTCCCCATGATtgtaaataaatcactttaGCCAACTGGCCCCAtgatgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggacacatTTGGAACATAGAAAGAGACTGATTGTCTTTTTATGTGGTCATTCGCACAATGGGTACAGTAATGGCAAGTACAGTGTACATAGACTATGGCTTTGTCTTTTGAATGCactaaatgtgttgttttgttgaGGCTCATACACTGGATTAACCACACAAAATTACccccaaggtgtgaatgtgtgcgcaAATACAAGTAAAACAAATACAAGCGTATTATTTGAGCTAAGGATACTAATACTCCTGGATATAAATGGCACAATAccaattttctcttttctgataCTAATACTGAAACCCTGAGTACCAGTTGATAACagtccaattatttttttaactactgAGTGTTACAAGATTGAATTCAAGCACTTCATTTACTTCATTCACTCAAACTGCTCAAACACACGACAGGAAGAAATTCATAACTATCACGATGTATGCAACACAGATTTCTTATTTCGTGTGAAGTATTTACACACAGTCCCCATGATAGCAACTCCCACACATGCTTAGTAGTCTAGTCTACTCAGTGTTATTCTGGTGACTAGGGTAGCGAATGTGATGCAAGTACAATTTTACTCAGAAGTTTACTCAGTTTTGCTCAGAAGTTTACTCAGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96413 True 3794 lncRNA 0.39 2 12041634 12045475

Neighbor

gene id symbol gene type direction distance location
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding downstream 45968 11966494 ~ 11995666 (-)
fhl2a fhl2a,fhl2,LOC108266723,LOC107716797,LOC108431475,LOC107676452,LOC107688730 coding downstream 146554 11887868 ~ 11895080 (-)
mfsd9 mfsd9,LOC106581991 coding downstream 284772 11748026 ~ 11756862 (-)
LOC113524909 inpp4a,LOC107676472,LOC107602877 coding downstream 303890 11710608 ~ 11737744 (-)
LOC113526203 NA coding downstream 340601 11698385 ~ 11701033 (-)
pdzk1 pdzk1 coding upstream 39640 12085115 ~ 12090514 (-)
col4a1 col4a1 coding upstream 498304 12543779 ~ 12589550 (-)
LOC113525968 LOC108261035 coding upstream 611578 12657053 ~ 12661141 (-)
sema5ba sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding upstream 730751 12776226 ~ 12873123 (-)
adcy5 adcy5,LOC107660638,LOC107555914,LOC107661140,LOC107596066 coding upstream 895758 12941233 ~ 13011343 (-)
LOC117597344 NA non-coding downstream 184367 11844876 ~ 11857267 (-)
LOC113526311 NA non-coding downstream 277915 11760451 ~ 11763719 (-)
G81014 NA non-coding downstream 351666 11688535 ~ 11689968 (-)
G81012 NA non-coding downstream 354392 11686981 ~ 11687242 (-)
G80995 NA non-coding downstream 395648 11645391 ~ 11645986 (-)
G81221 NA non-coding upstream 4892 12050367 ~ 12050654 (-)
G81222 NA non-coding upstream 5943 12051418 ~ 12051772 (-)
G81243 NA non-coding upstream 69632 12115107 ~ 12115359 (-)
LOC113546902 NA non-coding upstream 162534 12208009 ~ 12210224 (-)
G81413 NA non-coding upstream 250872 12296347 ~ 12296635 (-)
mphosph8 mphosph8,LOC107658258 other downstream 581309 11450212 ~ 11460325 (-)
LOC113546407 NA other downstream 738790 11297868 ~ 11302844 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other downstream 1006073 11018279 ~ 11035561 (-)
G80600 NA other downstream 1070477 10969417 ~ 10971157 (-)
LOC113526229 nxpe3 other downstream 1427347 10595440 ~ 10614287 (-)
irs2b irs2 other upstream 437186 12482661 ~ 12507688 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other upstream 667590 12713065 ~ 12728037 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other upstream 1146239 13191714 ~ 13250548 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other upstream 1716942 13762417 ~ 13855186 (-)
med14 med14,LOC107756768 other upstream 2493393 14538868 ~ 14553495 (-)

Expression


Co-expression Network