G81612 (col4a2,LOC108261033)


Basic Information

Item Value
gene id G81612
gene name col4a2,LOC108261033
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 12654336 ~ 12655862 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU96832
ATTtaatttgttgttgttcagtAATGCTAACAGTCACAATCATTCAGAACATAGTCTAAAAATATATTCCACATAAATACATTGTTAACTTGTTAACATTCAATGCAACAACCCATTGTTTAATCTCCTTTTACTTGTTTATGGTCAGATAAAGCTATTCTAGATACATAAAACTGAGAAGGCATGTGGTATGCATGGCTGAGCAAAGTACAAATGTGGTCATTCACCTGATGAATGTGGTCTATTAATCATTAAATATCAGATTTTAAGAAGGACTTTCTGTTATAAAGGAGCTATTCATTTGTCTCTTTGCtgtgcaagaaaaaaacaatttggaCAATTTTCATTATGTAAAAATCAGTGCAGTCTGTGTAACCGAATAGAAACAAATTAATCCATAATTCTTGTTCAATGAGACAAGATGTTCATATCAGAGAAACTGCTCTCTGGTCTGTAGTTCTGTAAAAAAGGTGCATGCTTGTGCTCAGAGGCTGTTGAGGAAGCATCGTATAATGATTAtaacaacatactgtattttaagtGCAAATAATTCcccacaaaacaaaatgtacagtTGGAGAACAGTGTTAGTAAAACAGAGTTCATTATCTGATGATAAAATCATGattaaaaacttaaagttaaagcAACACTATTTGAGGTGTCACTCAGATGGTTGTATTGTTCCAACACTAAACATATAGTTTATAGTGTAAAGCATTTGGCTGGtgtataaatcacacactgagaCATTCTAATATGTCATACATAGATGAATATAAGGGAAGCAGTGCATTAACATGGGCGTCTTTGGTTCTGCTGTATGATGTATTTGGTAATATCAGTTGTACAAATCATGTTGAATGAGGTAATAAGTTAGGAAAAGCACCATTTCTAATGTAACATGagtaaagatataaaaaaaaaattctaagcTTCTGATGCTTCTTTGACCTCTCTTCTCAACACATTTACATATCTTCAGTCCTTAGGCACATAGGGAGGGGTACATAGTAATGAAGAAAAACTGAGCGTCATCCATGATGATGTAATAGTATGCAGTATATAAATTAGGAGCTGTTAACAaactttactttaaaaacaatcctttttgttttattaacttaatAGTTACTGTGATCTCTGGGTGACCTTTACAGCTTACCTTGGCATTCTATACTGGACTGCacacaaaaatctaaaaatggcCACACCCTCAAGTCAAAGTTCATACTAGTCACAGGTTCTTCATGCAGACTTGGCAGCGACTGATGCGTGAGAGGAGCTGTCCCGCCTTGAGAGTCTCAGACTCAGGGGAACTGTGGAAGGACTGGTCAATGGATGTCAGCCAGAAGCTGTGCTTGTTAGAGAAGTAGTGACAGGTACCCTTAGCTCCATTACACTCAATGAAGGGAGTGGTGCGGAAATCCTCCAGACACGAGCCTGGAGACACCAGAGACTGACCACCTCCTTCATCTCCAGCTGCTGTA

Function

symbol description
col4a2 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region and membrane. Predicted to be part of collagen trimer. Predicted to be active in basement membrane and extracellular space. Is expressed in eye; head; hypodermis; optic fissure; and optic furrow. Human ortholog(s) of this gene implicated in atherosclerosis and porencephaly. Orthologous to human COL4A2 (collagen type IV alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-2(IV) chain-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96832 True 1490 lncRNA 0.36 2 12654336 12655862

Neighbor

gene id symbol gene type direction distance location
col4a1 col4a1 coding downstream 64786 12543779 ~ 12589550 (-)
pdzk1 pdzk1 coding downstream 563822 12085115 ~ 12090514 (-)
st6gal2a st6gal2 coding downstream 604635 12015445 ~ 12049701 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding downstream 658670 11966494 ~ 11995666 (-)
fhl2a fhl2a,fhl2,LOC108266723,LOC107716797,LOC108431475,LOC107676452,LOC107688730 coding downstream 759256 11887868 ~ 11895080 (-)
LOC113525968 LOC108261035 coding upstream 1191 12657053 ~ 12661141 (-)
sema5ba sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding upstream 120364 12776226 ~ 12873123 (-)
adcy5 adcy5,LOC107660638,LOC107555914,LOC107661140,LOC107596066 coding upstream 285371 12941233 ~ 13011343 (-)
hacd2 hacd2,LOC107660639,LOC107741899 coding upstream 357663 13013525 ~ 13021552 (-)
LOC113526136 LOC108266238,LOC107741933,LOC106586425,LOC102795313,LOC101468032,LOC100710868 coding upstream 418834 13074696 ~ 13085298 (-)
G81520 NA non-coding downstream 219764 12434367 ~ 12434572 (-)
G81413 NA non-coding downstream 357701 12296347 ~ 12296635 (-)
LOC113546902 NA non-coding downstream 444112 12208009 ~ 12210224 (-)
G81243 NA non-coding downstream 538977 12115107 ~ 12115359 (-)
G81222 NA non-coding downstream 602564 12051418 ~ 12051772 (-)
G81634 NA non-coding upstream 44388 12700250 ~ 12700493 (-)
G81802 NA non-coding upstream 265054 12920916 ~ 12923093 (-)
G81932 nifk non-coding upstream 440847 13096709 ~ 13099204 (-)
LOC117597411 NA non-coding upstream 622038 13277900 ~ 13282536 (-)
G81995 NA non-coding upstream 643596 13299458 ~ 13300403 (-)
irs2b irs2 other downstream 146648 12482661 ~ 12507688 (-)
mphosph8 mphosph8,LOC107658258 other downstream 1194011 11450212 ~ 11460325 (-)
LOC113546407 NA other downstream 1351492 11297868 ~ 11302844 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other downstream 1618775 11018279 ~ 11035561 (-)
G80600 NA other downstream 1683179 10969417 ~ 10971157 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other upstream 57203 12713065 ~ 12728037 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other upstream 535852 13191714 ~ 13250548 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other upstream 1106555 13762417 ~ 13855186 (-)
med14 med14,LOC107756768 other upstream 1883006 14538868 ~ 14553495 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other upstream 2171813 14827675 ~ 14837409 (-)

Expression


Co-expression Network