G81995


Basic Information

Item Value
gene id G81995
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13299458 ~ 13300403 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU97281
gcaaacttttggtcttttatgatccgcaaTGCCTACTTctatcaaaaggtgcaggctatttgttggtatctcaaatagtgaaggctacgGCAGGGGGTAAAGCAtcctcttacaaagccccacagttatggaacagccttccacttagtgtttggggctcagacacagtctcagtgtttaagtctaggctgaaaacatatttgtttagtcaagccttttgtgaatagctttttcttaggtaaaggagcagatctggagggttcacaggcatagagtgttgtggtgaactgggatgtttggatggtGTCGCCTCctcactctcacacgttcagtcaggtttgttgacggtggtgtggctggccgctttatgtcccatggcaccttcatgtctgtgttaccttctggctctcccttttagttatgctgtcacagctagtcttgccggagtccttGCTTGCACTTTGCACGCAAAGTACaatgtccttaaccattacgggacaaaagcttacctaacaatctctccctccctctctctccttctctctttttctttctctctctgtctctctctttctctgtcaagctacatatgctactcctgagataccagtgatcctgaccccttctgctttCCGGACCTACcagatccatcctgatgccctacttctggttggagttctcattggttggagatcgctcgctgctgccGGGGgcggccccacatggacagcctgaggatcattgggattgctggggatggtgccacttgggggccatggagatggcttggggatctcatatggggagtcgtactgtgatggcttgggactgcgattgctgtggtggctttggggctgcggttgctgtgagcacttttgcactcaggtcttcatcagtggacagtggataggttcaacaaaccagacttgtGAAAACtctaatgaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97281 True 946 lncRNA 0.49 1 13299458 13300403

Neighbor

gene id symbol gene type direction distance location
LOC113526136 LOC108266238,LOC107741933,LOC106586425,LOC102795313,LOC101468032,LOC100710868 coding downstream 214160 13074696 ~ 13085298 (-)
hacd2 hacd2,LOC107660639,LOC107741899 coding downstream 277906 13013525 ~ 13021552 (-)
adcy5 adcy5,LOC107660638,LOC107555914,LOC107661140,LOC107596066 coding downstream 288115 12941233 ~ 13011343 (-)
sema5ba sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding downstream 426335 12776226 ~ 12873123 (-)
LOC113525968 LOC108261035 coding downstream 638317 12657053 ~ 12661141 (-)
inhbb inhbb,LOC103026097,LOC107596060,LOC107661134 coding upstream 13589 13313992 ~ 13321538 (-)
si:dkey-3d4.3 LOC108266678 coding upstream 22227 13322630 ~ 13330891 (-)
lrp1bb lrp1b,LOC107660661,LOC107661145,LOC107746259 coding upstream 150789 13451192 ~ 13715233 (-)
atp1a1b atp1a1,atp1a1b,LOC107656784,LOC107569141,LOC107756749 coding upstream 497634 13798037 ~ 13809445 (-)
mab21l3 mab21l3,LOC107597583,LOC107756750,LOC107748187 coding upstream 521525 13821928 ~ 13828093 (-)
LOC117597411 NA non-coding downstream 16922 13277900 ~ 13282536 (-)
G81932 nifk non-coding downstream 200254 13096709 ~ 13099204 (-)
G81802 NA non-coding downstream 376365 12920916 ~ 12923093 (-)
G81634 NA non-coding downstream 598965 12700250 ~ 12700493 (-)
G81612 col4a2,LOC108261033 non-coding downstream 643596 12654336 ~ 12655862 (-)
G82000 NA non-coding upstream 1651 13302054 ~ 13302257 (-)
G82012 NA non-coding upstream 7124 13307527 ~ 13307726 (-)
G82035 NA non-coding upstream 31887 13332290 ~ 13332503 (-)
G82055 NA non-coding upstream 54338 13354741 ~ 13355694 (-)
LOC113523953 NA non-coding upstream 586244 13886647 ~ 13889526 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other downstream 48910 13191714 ~ 13250548 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other downstream 571421 12713065 ~ 12728037 (-)
irs2b irs2 other downstream 791770 12482661 ~ 12507688 (-)
mphosph8 mphosph8,LOC107658258 other downstream 1839133 11450212 ~ 11460325 (-)
LOC113546407 NA other downstream 1996614 11297868 ~ 11302844 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other upstream 462014 13762417 ~ 13855186 (-)
med14 med14,LOC107756768 other upstream 1238465 14538868 ~ 14553495 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other upstream 1527272 14827675 ~ 14837409 (-)
dcaf6 dcaf6 other upstream 1749480 15049883 ~ 15077216 (-)
LOC117597380 NA other upstream 1806546 15106949 ~ 15114695 (-)

Expression


Co-expression Network