G82000


Basic Information

Item Value
gene id G82000
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13302054 ~ 13302257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU97286
tgagttACCAACCATGATTGGCTCACTGTCTGATCCTGAAGAACTTGACCACggaactgaatgcttagaatcagtGTTCCGCTAcacactagataaggtagctccacttaaaagaaaaataattagagagaaaaagctatcACCCTGGTATAACGATCACACACGGACCTTAGAAAAGACCACTCGAAAATTAGAacataaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97286 True 204 lncRNA 0.40 1 13302054 13302257

Neighbor

gene id symbol gene type direction distance location
LOC113526136 LOC108266238,LOC107741933,LOC106586425,LOC102795313,LOC101468032,LOC100710868 coding downstream 216756 13074696 ~ 13085298 (-)
hacd2 hacd2,LOC107660639,LOC107741899 coding downstream 280502 13013525 ~ 13021552 (-)
adcy5 adcy5,LOC107660638,LOC107555914,LOC107661140,LOC107596066 coding downstream 290711 12941233 ~ 13011343 (-)
sema5ba sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding downstream 428931 12776226 ~ 12873123 (-)
LOC113525968 LOC108261035 coding downstream 640913 12657053 ~ 12661141 (-)
inhbb inhbb,LOC103026097,LOC107596060,LOC107661134 coding upstream 11735 13313992 ~ 13321538 (-)
si:dkey-3d4.3 LOC108266678 coding upstream 20373 13322630 ~ 13330891 (-)
lrp1bb lrp1b,LOC107660661,LOC107661145,LOC107746259 coding upstream 148935 13451192 ~ 13715233 (-)
atp1a1b atp1a1,atp1a1b,LOC107656784,LOC107569141,LOC107756749 coding upstream 495780 13798037 ~ 13809445 (-)
mab21l3 mab21l3,LOC107597583,LOC107756750,LOC107748187 coding upstream 519671 13821928 ~ 13828093 (-)
G81995 NA non-coding downstream 1651 13299458 ~ 13300403 (-)
LOC117597411 NA non-coding downstream 19518 13277900 ~ 13282536 (-)
G81932 nifk non-coding downstream 202850 13096709 ~ 13099204 (-)
G81802 NA non-coding downstream 378961 12920916 ~ 12923093 (-)
G81634 NA non-coding downstream 601561 12700250 ~ 12700493 (-)
G82012 NA non-coding upstream 5270 13307527 ~ 13307726 (-)
G82035 NA non-coding upstream 30033 13332290 ~ 13332503 (-)
G82055 NA non-coding upstream 52484 13354741 ~ 13355694 (-)
LOC113523953 NA non-coding upstream 584390 13886647 ~ 13889526 (-)
LOC113526249 NA non-coding upstream 614846 13917103 ~ 13919206 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other downstream 51506 13191714 ~ 13250548 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other downstream 574017 12713065 ~ 12728037 (-)
irs2b irs2 other downstream 794366 12482661 ~ 12507688 (-)
mphosph8 mphosph8,LOC107658258 other downstream 1841729 11450212 ~ 11460325 (-)
LOC113546407 NA other downstream 1999210 11297868 ~ 11302844 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other upstream 460160 13762417 ~ 13855186 (-)
med14 med14,LOC107756768 other upstream 1236611 14538868 ~ 14553495 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other upstream 1525418 14827675 ~ 14837409 (-)
dcaf6 dcaf6 other upstream 1747626 15049883 ~ 15077216 (-)
LOC117597380 NA other upstream 1804692 15106949 ~ 15114695 (-)

Expression


Co-expression Network