LOC117597380


Basic Information

Item Value
gene id LOC117597380
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15106949 ~ 15114695 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU98389
GGTTATGTATACAGTCAAAATATTGCAACTGGGACAACTTACACTTTTCGTCCAACAATACAAGGAAAAATTGAAAATTTTGACTGGAGACACAATGGGTACTTAGTGGTTGAGTGGGATCCTGACAACGGGGCTCACTGGTATCGATACGGCGAACGAGCACATAttaactctgacactggagacctcACACTTCAGGTGAAGAAGGAGGACAGTGGTGTATTTAAAGGTCAATTCCAGGTGAAAGGAGTTCTACAGTATTTTGAACGTACGATTACAGTGATTGATGCAGTTTCTGAGCCAAAAGTGACTTGTGAGCAGAATGACACAGACATAACACTTCTGTGTTCAGTGGACCCTCCAGTGCAGGCAGAGTTTACCTGGAGAGGACCAGATGAGTTCTCTCATGTTGGGAAAAGTGTTCATATCATCAAAAAATAAAGTGATTCGATCTATtattgcactgcaaaaaaaagaccATAGAGTTCAAACTTAAGGACTGTACTGAAGGCAATGGCCTTCCTGTTTCTTTATCTGCTACAGTATTCTTTATTATTGTTCTGATTTGTGCTTAGCCTCATTGAGTTATCTTGGCAAATCATCTTCAGCAATATACTGCCAGTCAGCTTAGCTTACTCACAGACAATGCAAGCA
>XM_034304607.1
GGCGGGCTGGTGTTCCTCTTAATGCTACACTCTTTCTGGTTAACCagaagtaaaaaataaacatggcgAGAAAGAGTTACATACAGGGCATCTTAATGTCCTTCATTCTATTTGATGTTGGTTATGTATACAGTGAAAATATTGCAACTGGTACAAATTACACTTTTCGTCCAGCAATACAAGGAAAAATTGAAAATTTTGACTGGAGACACAATGGGTACTTAGTGGTTGAGTGGGATCCTGACAACGGGGCTCACTGGTATCGATACAGAGAACGAGCACATAttaactctgacactggagacctcACACTTCAGGTGAAGAAGGAGGACAGTGGTGTATTTAGAGGTCAATTCCAGGTGAAAGGAGTTCTACAGTATTTTGAACGTACGATTACAGTGATTGACACAGTTTCTGAGCCAAAAGTGACTTGTGAGCAGAATGACACAGACATAACACTTCCGTGCTCAGTGGACCCTCCAGTGCAGGCAGAGTTTACCTGGACAGGACCAGATGAGTTCTCTCATGTTGGGAAAAGTGTTCATATCACCAGAAAAGAAAGTGATTCGATCTATtactgcactgcaaaaaatgaagTGAGCCAAAAGACCATAGAGTTCAAACTTAAGGAGTGTCCTGGAGGTTATGTATACAGTCAAAATATTGCAACTGGGACAACTTACACTTTTCGTCCAACAATACAAGGAAAAATTGAAAATTTTGACTGGAGACACAATGGGTACTTAGTGGTTGAGTGGGATCCTGACAACGGGGCTCACTGGTATCGATACGGCGAACGAGCACATAttaactctgacactggagacctcACACTTCAGGTGAAGAAGGAGGACAGTGGTGTATTTAAAGGTCAATTCCAGGTGAAAGGAGTTCTACGGTATTTTGAACGTACGATTACAGTGATTGATGCAGTTTCTGAGCCAAAAGTGACTTGTGAGCAGAATGACACAGACATAACACTTCTGTGCTCAGTGGACCCTCCAGTGCCTGTAGAGTTTACCTGGAGAGGACCAGATGAGTTCTCTCATGTTGGGAAAAGTGTTCATATCAccagaaaagaaagagatgaCTCAATCTATtactgcactgcaaaaaatgaagTGAGCCAAAAGACCATAGAGTTCAAACTTAAGGAGTGTCCTGGAGGTTATGTATACAGTCAAAATATTGCAACTGGGACAAATTACACTTTTCGTCCAACAATACAAGGAAAAATTGAAAATTTTGACTGGAGACACAATGGGTACTTAGTGGTTGAGTGGGATCCTGACAACGGGGCTCACTGGTATCGATACGGCGAACGAGCACatattaacactgacactggagacctcACACTTCAGGTGAAGAAGGAGGACAGTGGTGTATTTAAAGGTCAATTCCAGGTGAAAGGAGTTCTACAGTATTTTGAACGTACGATTACAGTGATTGATGCAGTTTCTGAGCCAAAAGTGACTTGTGAGCAGAATGACACAGACATAACACTTCTGTGTTCAGTGGACCCTCCAGTGCAGGCAGAGTTTACCTGGAGAGGACCAGATGAGTTCTCTCATGTTGGGAAAAGTGTTCATATCATCAAAAAATAAAGTGATTCGATCTATtattgcactgcaaaaaaaagaccATAGAGTTCAAACTTAAGGACTGTACTGAAGGCAATGGCCTTCCTGTTTCTTTATCTGCTACAGTATTCTTTATTATTGTTCTGATTTGTGCTTAGCCTCATTGAGTTATCTTGGCAAATCATCTTCAGCAATATACTGCCAGTCAGCTTAGCTTACTCACAGACAATGCAAGCAAAAGTAAACAGCTTTATAATGTGTGAAATATGCTGTACttttagaaagaaagagcaTATGGCTAAAATGAATGcttctctgtaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU98389 False 654 lncRNA 0.41 3 15107053 15110482
XM_034304607.1 True 1924 mRNA 0.41 7 15106949 15114695

Neighbor

gene id symbol gene type direction distance location
slc35a5 slc35a5 coding downstream 85601 15013261 ~ 15021348 (-)
dipk2b c6hxorf36 coding downstream 202214 14900159 ~ 14904735 (-)
fundc1 fundc1,LOC107673665 coding downstream 249429 14853744 ~ 14857520 (-)
efhc2 efhc2 coding downstream 255547 14842500 ~ 14851402 (-)
mao maob,mao,LOC108266753,LOC107565948,LOC107673703,LOC107748155,LOC107695498,LOC107595828 coding downstream 282402 14793906 ~ 14824547 (-)
myo1b myo1b,LOC107664008 coding upstream 40892 15155587 ~ 15212864 (-)
stx19 stx19 coding upstream 304047 15418742 ~ 15424049 (-)
rsph1 rsph1 coding upstream 312159 15426854 ~ 15430622 (-)
fbxl3a fbxl3,fbxl3a,LOC107664003,LOC107670904,LOC107549764 coding upstream 321270 15435965 ~ 15441651 (-)
mycbp2 mycbp2,LOC107549765 coding upstream 327689 15442384 ~ 15505351 (-)
G82864 ccdc80,LOC101480086 non-coding downstream 102190 15002534 ~ 15004759 (-)
G82861 NA non-coding downstream 115463 14991216 ~ 14991486 (-)
G82858 NA non-coding downstream 135052 14971678 ~ 14971897 (-)
G82849 NA non-coding downstream 186669 14919749 ~ 14920280 (-)
G82759 NA non-coding downstream 314784 14727857 ~ 14792165 (-)
G82943 NA non-coding upstream 94620 15209315 ~ 15212319 (-)
G82961 NA non-coding upstream 256567 15371262 ~ 15374502 (-)
G83171 NA non-coding upstream 372388 15487083 ~ 15487834 (-)
G83173 NA non-coding upstream 433586 15548281 ~ 15600586 (-)
G83216 NA non-coding upstream 564755 15679450 ~ 15714440 (-)
dcaf6 dcaf6 other downstream 29733 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 269540 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 553454 14538868 ~ 14553495 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 1251763 13762417 ~ 13855186 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other downstream 1856401 13191714 ~ 13250548 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 829045 15943740 ~ 15973914 (-)
lmo7a lmo7 other upstream 928588 16043283 ~ 16076620 (-)
G83554 NA other upstream 1105269 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 1255532 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 1913542 17028237 ~ 17039843 (-)

Expression


Co-expression Network