G82943


Basic Information

Item Value
gene id G82943
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15209315 ~ 15212319 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU98423
CGTGTACTAACTTTGCGTTACGTTTGGTCAGTGtcgggttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgaagaCAAAGGGACTGCTACAACTCTGTTCCTTCTCAAGTGTTACCACTCTAGACACTCAGTCTACTTAATGGTCAGAAGagaagttttatttattctgtttattttttgattattttttgattatttatttactagGTGAAACATCccatttagtctttttttttttttaatgactgagGATTAAAATGAATATGTGATCTGCAAGCACACCCACACCAGCTGTTACACTGCTCATACATCAGAGTTtggtagcttttttttttttaacctgagaACACCTAGTCTTAATTTTCTGAGTTAGATTTCTTGCTAAATGTACATTACATGAAAACTATATGTCTGTAAGTAGTTTTGTTCATCCATTTGATTATTCTGTTCCTTTAGAGCAAAGTTGTTTAGTTGCCATGCACCCAGTATTGTTCTTTTGCTATCATTAAATCCACACTCCTTGTTACTGGTTAGTGATATCTGTGTTTTTGAGAACACTTGAAACCAGTGTTTATGCGTTTATTTCTCTCAGACACACCTGTATTCTGATCTtcagtgttttgcttttttttcctttctattCTTGTTGTTTggtaacacacagtgtttaagtTGCTTTGGGGAGGTCATGTATTGTTATTGTACATGCTTTGCCTGCAGAACTCAACACCTACTCTAGTGCACTTCTCAGGTAAAGTGGACAATAGATCAGAGGTGATGAAGCCTGTAGGGATTATTACAACCCACACGGTATCTGGTGTAGTAGTGTTCATGTAAAAGAAGCTGCGTTCTGTGTGACTGAGGGTCAACACAGGAGTTGACATGAATTGTACTACATGGGGAAAAATTACACAACTCTTTTTGCTATTTGTGTAGACCCTGGCTACATGAATAGTTGTTATATCAAGGTATTAGTGATGGTCTGATTAAAAAGTTGGAAACAGTCACTTATTGTTTGAGCAAAAACGTTACAATCCGaacattacaaatataaatgactttttttcacCGTTTTTATCGTATTAGACCGCATGTAACCTAccttttaaaagaaacattgGTCGGTTGCACTTGCTTGACTTGCAGGATGGCTTTCCACTGCACGCACGTACAAGTCGACTCATGCCTCAATACCAGTGTTAATGGAGATTTACTAGTAGACGCTGTTTTAGAAGTTGTGGCAGGTTGTGCTCAGCCCTGTTTCCCAGAGAGCGTCATGGGGTGTTAGCCATGCAGGGGGGCAGATTCGTCACTAATTGGCAAACACATAGCTAGCTAAGGGTTGCTGCAAACTTGGGCCCAGTGCCAGGCAGAAGGagtgtggcagtctgggaaaacctctCGGATGTCACTGTGAATGAATTCCCGCACACAGCCAAAAACAAGGGAAAATGGTGTCCTGGCCTAGGTTTTTCTTATTATAACATAATTTGACACCTTAGCttcaagaaaccataaatatatttcaccacaACAACATGGAAATGTTATCATTTACTTTTAAGTCTTGCCTAAGATTTCTGCAAAGACCATGTTGGGCAAGgatccagtttaacaaatgtgaTGGTAAAATCAGTCAGTCCACCTTAAGATGTGTAATACCTTGTAATACCTTGCCTAAGTGTTCTTAActtacacagtgaatgtcaggcttGGATCAAGTCGCTGGATAGCTATGTGAGATAGTAAAATGGTCATAAAtctaatcagataccagctatCAAAATATCCATGATGCACTGTGCTGCATTTGAAGTggaaagtttaatttttttttttttccacttgtcagggtaatctgattttaaaatgctatatttCTAGTTGTGGCTGATatgcatgcaaaagagaaacatattccagttcaggaaagcctgtagcCACTGTATAAATCAACATACTTACATGTGCAAATTGCGTGTATTCATTTGACTAATGTTTTTCCTAATATGACATGCAGTAAATCATGGCCCTTTTAAAAGCATGGTTTACCTGAGTCTGTCCAAGATatagcaaaaatattattatatcagtCCAGATACGAGTCTTTTGTACGTGCTTTAAGTCTTTAACTTCTAACTAGAATTAAAAGGAAGACTACAGGTTATAGTTGTCCTGTTGTGTTCAGAACATGTGATCTGTTCAAGCCTAATGAAGATCAAGTCCATTTTTATCTTCATCCTATCCTTAAACATACAAGACAGAACACGGCCTTGGTGCATGGCGTCGTTTCAGTAGAACTAGCATAGTTGTGTTTGAATCAGTACCTTCAAGACTGGCTTTTGATTGACAGACAAGTACATCTTAAAAAATGTACCAGTATTATTTAACATATGGTTATTGACTTTCAGATTTTCCCATAGTATTTGTTTCCAAAAATTAGTTTTTCATGCATAAGGATAATCATGTGTAATGGTAATTGAGGATGTAGGTTAACTTCATTATAAAGTCTGACTGTAGGGACATTGTGTTATGGTTATGTGAGATGGTACTCAGATCAGTGATCAGTGGTAAGCGGTTAAAAAAGGTCCAGAAGAGTTGATGTATTTTAGTGCTGAGTCAGTACAGTGGAAAAGTCTGTCTCTGAGTTTACCCTGGCACTGGAAGATGCTCATGAAGCAGCGTTTCAGGTCACTGAGCAAGCTTGCCAGTCCACACAAATAGTCACAGTGTCTGTGTCTTTCTAAAGCTGTTGCATTTGGAGGCACTCATAATTCTCACATTTGCCTGTAATCTGGGATGCAGTCTGGCTGCCACATCATTTTGGACTTTGCACTCCATTAGAGCCaccagtattatttatttttgctcatgtGTCTGTTAAGGCCATGAGGTTGCCAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98423 True 2911 lncRNA 0.38 2 15209315 15212319

Neighbor

gene id symbol gene type direction distance location
slc35a5 slc35a5 coding downstream 187967 15013261 ~ 15021348 (-)
dipk2b c6hxorf36 coding downstream 304580 14900159 ~ 14904735 (-)
fundc1 fundc1,LOC107673665 coding downstream 351795 14853744 ~ 14857520 (-)
efhc2 efhc2 coding downstream 357913 14842500 ~ 14851402 (-)
mao maob,mao,LOC108266753,LOC107565948,LOC107673703,LOC107748155,LOC107695498,LOC107595828 coding downstream 384768 14793906 ~ 14824547 (-)
stx19 stx19 coding upstream 206423 15418742 ~ 15424049 (-)
rsph1 rsph1 coding upstream 214535 15426854 ~ 15430622 (-)
fbxl3a fbxl3,fbxl3a,LOC107664003,LOC107670904,LOC107549764 coding upstream 223646 15435965 ~ 15441651 (-)
mycbp2 mycbp2,LOC107549765 coding upstream 230065 15442384 ~ 15505351 (-)
vwa8 vwa8 coding upstream 348166 15560485 ~ 15626621 (-)
G82904 NA non-coding downstream 83667 15085363 ~ 15125648 (-)
G82864 ccdc80,LOC101480086 non-coding downstream 204556 15002534 ~ 15004759 (-)
G82861 NA non-coding downstream 217829 14991216 ~ 14991486 (-)
G82858 NA non-coding downstream 237418 14971678 ~ 14971897 (-)
G82849 NA non-coding downstream 289035 14919749 ~ 14920280 (-)
G82961 NA non-coding upstream 158943 15371262 ~ 15374502 (-)
G83171 NA non-coding upstream 274764 15487083 ~ 15487834 (-)
G83173 NA non-coding upstream 335962 15548281 ~ 15600586 (-)
G83216 NA non-coding upstream 467131 15679450 ~ 15714440 (-)
G83270 NA non-coding upstream 617810 15830129 ~ 15887375 (-)
LOC117597380 NA other downstream 94620 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 132099 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 371906 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 655820 14538868 ~ 14553495 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 1354129 13762417 ~ 13855186 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 731421 15943740 ~ 15973914 (-)
lmo7a lmo7 other upstream 830964 16043283 ~ 16076620 (-)
G83554 NA other upstream 1007645 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 1157908 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 1815918 17028237 ~ 17039843 (-)

Expression


Co-expression Network