G83171


Basic Information

Item Value
gene id G83171
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15487083 ~ 15487834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU98718
GGCTCGGATAACAACAGACATGAAGCTGCATTAACTTTTCTATGTCAGAAACTGGGaatttttggtgtgtgtgtctgtgtgcatctctcgctctctccttctttctctggGTGTGTCCGTATGTGTGTCCgcgtcactgtgtgtgtgtgtgtccgcgtcactgtgtgtgtgtgtgtgtgcgcgtctctgtgtgtgtgtgtgtgtgtgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98718 True 209 lncRNA 0.51 2 15487083 15487834

Neighbor

gene id symbol gene type direction distance location
fbxl3a fbxl3,fbxl3a,LOC107664003,LOC107670904,LOC107549764 coding downstream 45432 15435965 ~ 15441651 (-)
rsph1 rsph1 coding downstream 56461 15426854 ~ 15430622 (-)
stx19 stx19 coding downstream 63034 15418742 ~ 15424049 (-)
myo1b myo1b,LOC107664008 coding downstream 274219 15155587 ~ 15212864 (-)
slc35a5 slc35a5 coding downstream 465735 15013261 ~ 15021348 (-)
vwa8 vwa8 coding upstream 72651 15560485 ~ 15626621 (-)
epsti1 epsti1 coding upstream 256673 15744507 ~ 15761304 (-)
enox1 enox1,LOC107661308,LOC107713727 coding upstream 291693 15779527 ~ 15830018 (-)
tsc22d1 tsc22d1,LOC107713726,LOC107551985,LOC107688650,LOC108266727 coding upstream 376209 15864043 ~ 15892972 (-)
kctd4 kctd4,LOC107688678,LOC107713709,LOC107748885 coding upstream 419093 15906927 ~ 15908431 (-)
G82961 NA non-coding downstream 112581 15371262 ~ 15374502 (-)
G82943 NA non-coding downstream 274764 15209315 ~ 15212319 (-)
G82904 NA non-coding downstream 361435 15085363 ~ 15125648 (-)
G82864 ccdc80,LOC101480086 non-coding downstream 482324 15002534 ~ 15004759 (-)
G82861 NA non-coding downstream 495597 14991216 ~ 14991486 (-)
G83173 NA non-coding upstream 60447 15548281 ~ 15600586 (-)
G83216 NA non-coding upstream 191616 15679450 ~ 15714440 (-)
G83270 NA non-coding upstream 342295 15830129 ~ 15887375 (-)
LOC117597420 NA non-coding upstream 366226 15854060 ~ 15858049 (-)
G83285 NA non-coding upstream 389786 15877620 ~ 15879115 (-)
LOC117597380 NA other downstream 372388 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 409867 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 649674 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 933588 14538868 ~ 14553495 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 1631897 13762417 ~ 13855186 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 455906 15943740 ~ 15973914 (-)
lmo7a lmo7 other upstream 555449 16043283 ~ 16076620 (-)
G83554 NA other upstream 732130 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 882393 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 1540403 17028237 ~ 17039843 (-)

Expression


Co-expression Network