LOC113526197


Basic Information

Item Value
gene id LOC113526197
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15920825 ~ 15923209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU98894
cttttccttttttgctcGAGGCGCATGAAGTGTGCACGTGCCAGCGCAAGGTTATAAGCATGCTAATCATGAATCTAATGGAAAAATAAGCAGAAACACAGCAGATCCACCATGAtttcatgtttctgctcagcaACTGATCACCGTCCCGGATAGTATGGACACCGGGAGACGTGTAGGTGGACTGATCAGATGGCTGAAGGGAGCAGTACCTAGTCCTTTCTGAGGTTTTGTGCTGATTTTGTCAAACTACAGCAAAGATAACCATACCAGTACAGAATCTTCTGTCATGTGGAGACTGAAAAAGTAAAGACTGGGATTGATGAGCACATCTCAGATGTTTGCATGATATATAGCTACAagctatataatatatatacactatattaccaaaagtattcggtcacccatccaaatgatcagaatcaggtgccctaatcacttggcctggccacaggtgtataaaatcaagcacttaggcatgcagactgtttttacaaacatttgtgaaagaatgggctgctctcaggagctcagtgaattccagcgtggaactgtcataggatgccacctgtgcaataaatCCAGtcatgaaatttcct
>XR_003402738.2
GCGACGTTTTTCGGCGTGTTATACGcgttccttttccttttttgctcGAGGCGCATGAAGTGTGCACGTGCCAGCGCAAGGTTATAAGCATGCTAATCATGAATCTAATGGAAAAATAAGCAGAAACACAGCAGATCCACCATGAtttcatgtttctgctcagcaACTGATCACCGTCCCGGATAGTATGGACACCGGGAGACGTGTAGGTGGACTGATCAGATGGCTGAAGGGAGCAGTACCTAGTCCTTTCTGAGGTTTTGTGCTGATTTTGTCAAACTACAGCAAAGATAACCATACCAGTACAGAATCTTCTGTCATGTGGAGACTGAAAAAGTAAAGACTGGGATTGATGAGCACATCTCAGATGTTTGCATGATATATAGCTACAagctatataatatatatacactatattaccaaaagtattcggtcacccatccaaatgatcagaatcaggtgccctaatcacttggcctggccacaggtg

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU98894 True 602 lncRNA 0.43 5 15920825 15923179
XR_003402738.2 False 490 lncRNA 0.44 5 15920967 15923209

Neighbor

gene id symbol gene type direction distance location
kctd4 kctd4,LOC107688678,LOC107713709,LOC107748885 coding downstream 12394 15906927 ~ 15908431 (-)
tsc22d1 tsc22d1,LOC107713726,LOC107551985,LOC107688650,LOC108266727 coding downstream 27853 15864043 ~ 15892972 (-)
enox1 enox1,LOC107661308,LOC107713727 coding downstream 90807 15779527 ~ 15830018 (-)
epsti1 epsti1 coding downstream 159521 15744507 ~ 15761304 (-)
vwa8 vwa8 coding downstream 294204 15560485 ~ 15626621 (-)
vgll3 vgll3 coding upstream 22361 15945570 ~ 15948341 (-)
zgc:152951 LOC108266837,LOC108424411,LOC103461279,LOC105936156,LOC103141471,LOC106938088,LOC106905368,LOC105893400 coding upstream 76468 15999677 ~ 16009824 (-)
acod1 acod1 coding upstream 92980 16016189 ~ 16024344 (-)
uchl3 uchl3,LOC107658267,LOC107668893,LOC107568837 coding upstream 156353 16079562 ~ 16085068 (-)
LOC113525961 LOC108424292,LOC108266955,LOC103034814,LOC105899367,LOC107705174,LOC106586357 coding upstream 175544 16098753 ~ 16099552 (-)
G83270 NA non-coding downstream 33450 15830129 ~ 15887375 (-)
G83285 NA non-coding downstream 41710 15877620 ~ 15879115 (-)
LOC117597420 NA non-coding downstream 62776 15854060 ~ 15858049 (-)
G83216 NA non-coding downstream 206385 15679450 ~ 15714440 (-)
G83173 NA non-coding downstream 320239 15548281 ~ 15600586 (-)
G83309 NA non-coding upstream 16290 15939499 ~ 15940056 (-)
G83446 NA non-coding upstream 86747 16009956 ~ 16012207 (-)
G83456 NA non-coding upstream 102173 16025382 ~ 16026189 (-)
G83457 NA non-coding upstream 107325 16030534 ~ 16030743 (-)
G83473 NA non-coding upstream 149188 16072397 ~ 16072684 (-)
LOC117597380 NA other downstream 806130 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 843609 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 1083416 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 1367330 14538868 ~ 14553495 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 2065639 13762417 ~ 13855186 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 20531 15943740 ~ 15973914 (-)
lmo7a lmo7 other upstream 120074 16043283 ~ 16076620 (-)
G83554 NA other upstream 296755 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 447018 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 1105028 17028237 ~ 17039843 (-)

Expression


Co-expression Network