G83446


Basic Information

Item Value
gene id G83446
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16009956 ~ 16012207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU99071
TCAAATAGAAATGAGAGGTCAGCCCTCTAACCTGGGAAAATGATGGCATCAAAATCCTTTACGCTGAGTTCAGACAGATCTTGAATGTCACCTCGGGCAAGTCTAGCACTTTCCACAAGCACATTGCGCTTCTCCTCGGTGGGGGCACCTTTCAGGTGATCTACAACATGCATCTGATCAATGCTGGGTGCGAATATTTTAAACACTTGCTCCATTTCGGCTTAAATGCACCAGAACTGCAGAAGCTTCATGGATTTCAGTGCCGTCGAAAACACCACAACCTGCTAGAACTACAGCTACACGCTTAGCCATTGCTGTAAAGCGATGCTACAATTCACACACTTCAATAAAGGCGATGCCTGCAGTAGTCACAGAAGTGTGAAGTGCTGAAGAAAGGACACTCGGATGTCCGTGAGTAACTTTACTGCTAGCGCCCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99071 True 439 lncRNA 0.47 2 16009956 16012207

Neighbor

gene id symbol gene type direction distance location
zgc:152951 LOC108266837,LOC108424411,LOC103461279,LOC105936156,LOC103141471,LOC106938088,LOC106905368,LOC105893400 coding downstream 132 15999677 ~ 16009824 (-)
vgll3 vgll3 coding downstream 61615 15945570 ~ 15948341 (-)
kctd4 kctd4,LOC107688678,LOC107713709,LOC107748885 coding downstream 101525 15906927 ~ 15908431 (-)
tsc22d1 tsc22d1,LOC107713726,LOC107551985,LOC107688650,LOC108266727 coding downstream 116984 15864043 ~ 15892972 (-)
enox1 enox1,LOC107661308,LOC107713727 coding downstream 179938 15779527 ~ 15830018 (-)
acod1 acod1 coding upstream 3982 16016189 ~ 16024344 (-)
uchl3 uchl3,LOC107658267,LOC107668893,LOC107568837 coding upstream 67355 16079562 ~ 16085068 (-)
LOC113525961 LOC108424292,LOC108266955,LOC103034814,LOC105899367,LOC107705174,LOC106586357 coding upstream 86546 16098753 ~ 16099552 (-)
neb neb,LOC107725229,LOC107658288 coding upstream 281685 16293892 ~ 16349242 (-)
arl5a arl5a,LOC107555355 coding upstream 340936 16353143 ~ 16362904 (-)
G83309 NA non-coding downstream 69900 15939499 ~ 15940056 (-)
LOC113526197 NA non-coding downstream 86747 15920825 ~ 15923209 (-)
G83270 NA non-coding downstream 122581 15830129 ~ 15887375 (-)
G83285 NA non-coding downstream 130841 15877620 ~ 15879115 (-)
LOC117597420 NA non-coding downstream 151907 15854060 ~ 15858049 (-)
G83456 NA non-coding upstream 13175 16025382 ~ 16026189 (-)
G83457 NA non-coding upstream 18327 16030534 ~ 16030743 (-)
G83473 NA non-coding upstream 60190 16072397 ~ 16072684 (-)
G83474 NA non-coding upstream 60633 16072840 ~ 16073071 (-)
LOC117597324 NA non-coding upstream 212134 16224341 ~ 16228437 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 36042 15943740 ~ 15973914 (-)
LOC117597380 NA other downstream 895261 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 932740 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 1172547 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 1456461 14538868 ~ 14553495 (-)
lmo7a lmo7 other upstream 31076 16043283 ~ 16076620 (-)
G83554 NA other upstream 207757 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 358020 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 1016030 17028237 ~ 17039843 (-)
sp3a sp3 other upstream 1359772 17371979 ~ 17381172 (-)

Expression


Co-expression Network