G83456


Basic Information

Item Value
gene id G83456
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16025382 ~ 16026189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU99081
caAACATTTAAAGCACACACATGTAGTTATAAGAACATATTAATTTAGAGCACAAGTCTTAACAATACCGAAATATCAAAACAGTGTATTATGAATGGAAAAACAGTTCAGAAGCAAGAAGTGTGCACAGTTTTAAAGGAGTGTTAGATTTGATTTTTCTACCAGATCACAACAACAGTACAAAAGTCAGTGGAAACGGAGCATGCACATTAACAGAGAGTATGGCAAGAGCTGTTGAACTACTAGTCTGATAAACAACAGATGAGGGAGATATACAGTCTTTTTTGATACTTTATGGAAATCCTATGCTTTTAGTCTAATGCATCATCATGCAAGAGGTCATCATACATCCAATATACAGCTGTAAAAGTTTAAGCTACACCTTACTCCATTTGgttttgttaaatatcatcAAAGAGGCTACTCAAAATCTTTACAGGCATGAGAGCACATgcataaggattttttttaatattataggttaaaattttattgtaaactGTTTTAGTTCCATTATCTCTGGTGTGCTCGGTAGTTGCTGTAATAAAGTCTAGTGGGCAATATGAAATAATCTGAGATCTTTAATACCTGATGTCCTGTATTTAGTGGTTTTTAGTGGTCATAAAGTAAAGATAACTACTATGCAGTAACTTACGAAATCATTAAAGGGATGTGCAGGAGCTACTGTCTGTGACATGTATTTACATAACAGTGAATTAGCATCTATAGTGTTGAAGTAACTCAGTGATACAGTGTTCACTTCTAATAACCTAATACActattagggtttttttttctccctccgtGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99081 True 808 lncRNA 0.34 1 16025382 16026189

Neighbor

gene id symbol gene type direction distance location
acod1 acod1 coding downstream 1038 16016189 ~ 16024344 (-)
zgc:152951 LOC108266837,LOC108424411,LOC103461279,LOC105936156,LOC103141471,LOC106938088,LOC106905368,LOC105893400 coding downstream 15558 15999677 ~ 16009824 (-)
vgll3 vgll3 coding downstream 77041 15945570 ~ 15948341 (-)
kctd4 kctd4,LOC107688678,LOC107713709,LOC107748885 coding downstream 116951 15906927 ~ 15908431 (-)
tsc22d1 tsc22d1,LOC107713726,LOC107551985,LOC107688650,LOC108266727 coding downstream 132410 15864043 ~ 15892972 (-)
uchl3 uchl3,LOC107658267,LOC107668893,LOC107568837 coding upstream 53373 16079562 ~ 16085068 (-)
LOC113525961 LOC108424292,LOC108266955,LOC103034814,LOC105899367,LOC107705174,LOC106586357 coding upstream 72564 16098753 ~ 16099552 (-)
neb neb,LOC107725229,LOC107658288 coding upstream 267703 16293892 ~ 16349242 (-)
arl5a arl5a,LOC107555355 coding upstream 326954 16353143 ~ 16362904 (-)
kcnj3a kcnj3 coding upstream 403743 16429932 ~ 16457212 (-)
G83446 NA non-coding downstream 13175 16009956 ~ 16012207 (-)
G83309 NA non-coding downstream 85326 15939499 ~ 15940056 (-)
LOC113526197 NA non-coding downstream 102173 15920825 ~ 15923209 (-)
G83270 NA non-coding downstream 138007 15830129 ~ 15887375 (-)
G83457 NA non-coding upstream 4345 16030534 ~ 16030743 (-)
G83473 NA non-coding upstream 46208 16072397 ~ 16072684 (-)
G83474 NA non-coding upstream 46651 16072840 ~ 16073071 (-)
LOC117597324 NA non-coding upstream 198152 16224341 ~ 16228437 (-)
G83614 NA non-coding upstream 383239 16409428 ~ 16409893 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 51468 15943740 ~ 15973914 (-)
LOC117597380 NA other downstream 910687 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 948166 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 1187973 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 1471887 14538868 ~ 14553495 (-)
lmo7a lmo7 other upstream 17094 16043283 ~ 16076620 (-)
G83554 NA other upstream 193775 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 344038 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 1002048 17028237 ~ 17039843 (-)
sp3a sp3 other upstream 1345790 17371979 ~ 17381172 (-)

Expression


Co-expression Network