G84177


Basic Information

Item Value
gene id G84177
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17307569 ~ 17311955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU99946
GGGAAGCATATTCGAGGCTGGTGCGTAGCACCAGGCGCTACATGCAGAGAGGCAATTAAAATGATTATCACACTGACAATTAAAACGCGAATATGAAAAGCGCAGGCAATTACGTCGCCCACCTCTTTCTCAATCTTCAGCAGCTTTTTCACCGCCACCTCTTTGTCCTGCGAGATCCAGCGGGCACGGTACACACTGCCAAAGCTCCCGCCGCCACAGTTCTCGTAGAAGTGGATGTCATCGAATTTGATTTGAACGAAGGAGGCGCCCAGAGACGCCATGGCATAATGACACTTTTAAAACACTCCGCTCTCCTGTACAAGCAGTGAGTAGGCAGAAAAAGAGGGGAGAGAAACGGGCAAATTAGAGATGAAGTTGATTTGAGTCCCTGTGCGCAGTGACATCCAGGTCTGAGCTGCTCTTGTGTCTACTTTCGTACCATTGTAGAGTGACACAGATAAAGATATACACTCATCCACCCACcacctcatacacacacacacacacacacacacacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99946 True 518 lncRNA 0.49 2 17307569 17311955

Neighbor

gene id symbol gene type direction distance location
ppp1r9ala LOC108266327 coding downstream 57737 17216721 ~ 17249832 (-)
dync1i2a dync1i2 coding downstream 97671 17176681 ~ 17209898 (-)
hat1 hat1,LOC106581768 coding downstream 158894 17129990 ~ 17148675 (-)
dlx1a dlx1,dlx1a,LOC107742982 coding downstream 209587 17095074 ~ 17097982 (-)
itga6a itga6,itga6a,LOC107745248,LOC107742949,LOC107671295,LOC107657398 coding downstream 235761 17052057 ~ 17071808 (-)
cir1 cir1 coding upstream 125203 17437158 ~ 17443522 (-)
gpr155a gpr155 coding upstream 137925 17449880 ~ 17464276 (-)
wipf1a LOC108267026 coding upstream 153733 17465688 ~ 17472291 (-)
LOC113547453 chrna1,LOC108266097 coding upstream 161160 17473115 ~ 17482009 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC106590032 coding upstream 174093 17486048 ~ 17523051 (-)
G84061 NA non-coding downstream 178889 17127310 ~ 17128680 (-)
G83953 NA non-coding downstream 341396 16965511 ~ 16966173 (-)
G83614 NA non-coding downstream 897676 16409428 ~ 16409893 (-)
LOC117597324 NA non-coding downstream 1079132 16224341 ~ 16228437 (-)
G83474 NA non-coding downstream 1234498 16072840 ~ 16073071 (-)
G84182 NA non-coding upstream 12090 17324045 ~ 17324878 (-)
G84189 LOC108266646 non-coding upstream 20537 17332492 ~ 17346350 (-)
G84227 NA non-coding upstream 79729 17391684 ~ 17391947 (-)
LOC117597450 NA non-coding upstream 95263 17407218 ~ 17431431 (-)
G84394 NA non-coding upstream 414698 17726653 ~ 17727997 (-)
mettl8 mettl8 other downstream 267726 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 901091 16370227 ~ 16406478 (-)
G83554 NA other downstream 1086703 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 1230949 16043283 ~ 16076620 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 1333655 15943740 ~ 15973914 (-)
sp3a sp3 other upstream 60024 17371979 ~ 17381172 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 383335 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1601432 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 2131136 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 2256794 19568749 ~ 19586103 (-)

Expression


Co-expression Network