G84189 (LOC108266646)


Basic Information

Item Value
gene id G84189
gene name LOC108266646
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17332492 ~ 17346350 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU99960
ttttttttttgttgtttcattttaaaatcatttttattttgacgATTCAGTAGGATATAGTTggcaaaaaattatataaaaatattataacaaAACCCAAGAGTCTGAAACCTGAGGCAAAAAACCTAATTCATCTAGTAGtggtagtggtgtgtgtgtgtgaacagtcaTAATTAAAATCCCAAACAATATTACTAGTTTAGAGTACTAAAACATTCGTATTTCTGGAGTGTCTTGTGAGAAAGACCCTTGTCACAAGCTGAAAACATATGGAGGCATGAGGATTCAAGGCCAGTCATACaaataatggttaaaaaaattaaaaatagttaGGTCCTAGGCCTGTTCAAAGGTCTAAAGCAGTAATTATATTCCCACCCACATCTGAAAAAGAACTGTAGTACACTTGATCCACATGCCCACATATACACAGCATAAAAACCCTTAGCTCCGCCCACGCCCCCCTCTTCCTCCCTTTCGTGGACGGCCTCTGAGCTGTCTTTGGTCCTGCTGCTTATGGTCCTGTTTGGGAGGCTTCTTGCGTTCTACTTTAATCCATCCTCCCTCTGCAGCTTTGGCATCCTCTAGCTCATCTTTCTGCCTTTCTCCTACTGTTGCTGTTGCCAATCCTGGGATTATCTGTAACTGGTTCTGTGGTACTACTTGGTTGGTCCGATGTCGTCCGACTCTAGAGCCGCCATGAGATGCATGACTGCCCCCTCTATTGAATCTCCGGTCTCCTCCTCCGGTCACAGTTAGAGAGTTATAGGAGCCCTTTTTTTGGTAGTTGTACATGTGTCTACTGCTTTGAGAGCGTTCTCTCTCTGATGTGCTCTCTGAAGTGGTACTGGATGGGCTGCTACCCTTTGACCCCAGGTGGATTGAGGAGAGTTTGGTTGAAAGAGTAGGAGAGGAGCTTCGGGAGTCGGCCCATTGTGAAAGTGGACTGCGACTGGGTGATCTTCGCACAGCAGAAGCATATGATGACTGATTACCAAAAACAGACAGGAACTGCGGGAGGGTCATGCTGTCTGAGTGGTTGCTCGGCGTGGCACTGTGGCGCTCCTGGGCTAGGTCCTCTCTGAGCTGCTTTGATCTCAGACTGGAAATCCACTGAGGATC

Function

NR:

description
PREDICTED: mitogen-activated protein kinase kinase kinase MLT

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99960 True 1122 lncRNA 0.45 3 17332492 17346350

Neighbor

gene id symbol gene type direction distance location
ppp1r9ala LOC108266327 coding downstream 82660 17216721 ~ 17249832 (-)
dync1i2a dync1i2 coding downstream 122594 17176681 ~ 17209898 (-)
hat1 hat1,LOC106581768 coding downstream 183817 17129990 ~ 17148675 (-)
dlx1a dlx1,dlx1a,LOC107742982 coding downstream 234510 17095074 ~ 17097982 (-)
itga6a itga6,itga6a,LOC107745248,LOC107742949,LOC107671295,LOC107657398 coding downstream 260684 17052057 ~ 17071808 (-)
cir1 cir1 coding upstream 90808 17437158 ~ 17443522 (-)
gpr155a gpr155 coding upstream 103530 17449880 ~ 17464276 (-)
wipf1a LOC108267026 coding upstream 119338 17465688 ~ 17472291 (-)
LOC113547453 chrna1,LOC108266097 coding upstream 126765 17473115 ~ 17482009 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC106590032 coding upstream 139698 17486048 ~ 17523051 (-)
G84182 NA non-coding downstream 7614 17324045 ~ 17324878 (-)
G84177 NA non-coding downstream 20537 17307569 ~ 17311955 (-)
G84061 NA non-coding downstream 203812 17127310 ~ 17128680 (-)
G83953 NA non-coding downstream 366319 16965511 ~ 16966173 (-)
G83614 NA non-coding downstream 922599 16409428 ~ 16409893 (-)
G84227 NA non-coding upstream 45334 17391684 ~ 17391947 (-)
LOC117597450 NA non-coding upstream 60868 17407218 ~ 17431431 (-)
G84394 NA non-coding upstream 380303 17726653 ~ 17727997 (-)
LOC117597384 NA non-coding upstream 394287 17740637 ~ 17744025 (-)
G84411 NA non-coding upstream 487025 17833375 ~ 17833589 (-)
mettl8 mettl8 other downstream 292649 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 926014 16370227 ~ 16406478 (-)
G83554 NA other downstream 1111626 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 1255872 16043283 ~ 16076620 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 1358578 15943740 ~ 15973914 (-)
sp3a sp3 other upstream 25629 17371979 ~ 17381172 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 348940 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1567037 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 2096741 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 2222399 19568749 ~ 19586103 (-)

Expression


Co-expression Network