mrpl30 (mrpl30)


Basic Information

Item Value
gene id mrpl30
gene name mrpl30
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 11641241 ~ 11645089 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910266.2
ATACTCCCAGGACATTTTATGTGGAGGGACCAACTTCCGTTTCCGTTTTGTCTTACGCACTGATGTATGTGAATTGTGCACTTGAAATTGTAAAGTTTccttaatattattaatgttcaGGAGCAGATTCGTGTGAAGTTAAGCTAAAGATACATTTGAGTGGAGTGAGTTGTGTCGGATTTAGTTTTCCGTTAGCACAGTACATGTTAGAACATTAATAACCTTGGTGTACATGTGAGCCTCCATCATCCAAACAGAAGAAATGGCAGGATTGGGTCGAGTCCTCATGTCTGTCACTGCTTTGGCAAAGAATCAGTCAGAAGCTATATCACGGCCAGTGTACATGGTTTGTCGGAGCAAATTTACAAGATCTCGTATTCCTCCACAGGTATTTGAAGAGCGTTCTAAGGAACATGAACTGTATGGTGGTGATCCAGAGCAGCCACATAAACTCCACATAGTGACCCGGGTCAAGAGCACAAAGGGACGACCTTACTGGGAAAAAAAGGTGGTGAAAAGTTTGGGGTTATTAAAGTCACATGAGCCCAGAGTACATAAGAACACACCCTCAGTGAATAACCAACTGAAAATCATTAAGCACCTGGTTAGgATCCAACCCTTGAAGCTTCCCAGTGGACTACCTTCAGAAGAAGAAATGGCAGGTTCATATCTAAACAGTAAAGGAGAGCTGGTAGTAAACCATCTTCAAATGTCAGCAGCACAGAAAACCATGGACTCATAATTCATCTACAACAGACAGTACATCTGTCTTGTGTTTGCTGttgattaaacattaaaaaaaactaatatgattctttttctttcaaaatattcCTTGTTGTAAAATATCTTCATCCTAGTTCTGTAATCATGAAAGAGGAATGACTCTAATAGTCTATACTGTGTCAGTGGGTATAGGACCCAATATAATTAACCCTTTTTTGAGATGTAAGGACCTGTATAAGCATATTACTAAATTTTGAGATGgacaaaattaaagaaaacttcTCTCACTGAA

Function

symbol description
mrpl30 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of large ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPL30 (mitochondrial ribosomal protein L30).

NR:

description
39S ribosomal protein L30, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02907 RP-L30, MRPL30, rpmD; large subunit ribosomal protein L30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910266.2 True 1018 mRNA 0.39 5 11641241 11645089

Neighbor

gene id symbol gene type direction distance location
aff3 aff3 coding downstream 159658 11461851 ~ 11481583 (-)
zmym2 zmym2 coding downstream 193558 11426831 ~ 11447683 (-)
ift88 ift88 coding downstream 249399 11376196 ~ 11391842 (-)
il17d NA coding downstream 265178 11374436 ~ 11376063 (-)
sap18 sap18,LOC107597378,LOC107668906,LOC107569214 coding downstream 329020 11310484 ~ 11312221 (-)
si:dkey-4e7.3 LOC108266854,LOC108431471 coding upstream 47316 11692405 ~ 11697736 (-)
LOC113526203 NA coding upstream 53296 11698385 ~ 11701033 (-)
LOC113524909 inpp4a,LOC107676472,LOC107602877 coding upstream 65519 11710608 ~ 11737744 (-)
mfsd9 mfsd9,LOC106581991 coding upstream 102937 11748026 ~ 11756862 (-)
fhl2a fhl2a,fhl2,LOC108266723,LOC107716797,LOC108431475,LOC107676452,LOC107688730 coding upstream 242779 11887868 ~ 11895080 (-)
G80988 NA non-coding downstream 39083 11601908 ~ 11602158 (-)
G80972 NA non-coding downstream 80655 11560380 ~ 11560586 (-)
G80655 NA non-coding downstream 545634 11094513 ~ 11095607 (-)
G80658 NA non-coding downstream 623558 11016762 ~ 11017683 (-)
G80608 NA non-coding downstream 657886 10980392 ~ 10983355 (-)
G80995 NA non-coding upstream 302 11645391 ~ 11645986 (-)
G81012 NA non-coding upstream 41892 11686981 ~ 11687242 (-)
G81014 NA non-coding upstream 43446 11688535 ~ 11689968 (-)
LOC113526311 NA non-coding upstream 115362 11760451 ~ 11763719 (-)
LOC117597344 NA non-coding upstream 199787 11844876 ~ 11857267 (-)
mphosph8 mphosph8,LOC107658258 other downstream 180916 11450212 ~ 11460325 (-)
LOC113546407 NA other downstream 338397 11297868 ~ 11302844 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other downstream 605680 11018279 ~ 11035561 (-)
G80600 NA other downstream 670084 10969417 ~ 10971157 (-)
LOC113526229 nxpe3 other downstream 1026954 10595440 ~ 10614287 (-)
irs2b irs2 other upstream 837572 12482661 ~ 12507688 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other upstream 1067976 12713065 ~ 12728037 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other upstream 1546625 13191714 ~ 13250548 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other upstream 2117328 13762417 ~ 13855186 (-)
med14 med14,LOC107756768 other upstream 2893779 14538868 ~ 14553495 (-)

Expression


Co-expression Network