sfrp2


Basic Information

Item Value
gene id sfrp2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 4290072 ~ 4294136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910834.2
TTAACTGACCAGGGTTAGCGCTTGGGTCTTGCTCTCCAcccctcttcacacacacacacacacacacacacacacacacacacacacacacacgcacaaagtGAGCGCTTCACGTGCAGTTTTAGTTTCTCTTCAGAGGAAACCGACACCTGATTGGAGTTTTCTGTCCCGCGTGCAGCCTCACATCTCTAACCCGCTATACGCGCCACGATGCACTCGCTTCTGCCCGCGGTACTCGCGTGCGCCGTGCACTTTGCGCTCGGGATGTACGGCTTCGACCATGCTGAACTCTCTCCGCACCGGAGCAGCTGCAGACCGATTCCTCGGACCCTGTACCTGTGCCGCGGCATCGAATACGCGCGCATGCGTCTGCCCAATCTGCTCGGGCACGAGACTATGAGCGAGGCGGCGCAACAGGCTGCCGCCTGGGTACCTCTTGTGCACAAGCGCTGCCACACCGACACGCGCAAGTTCCTGTGCTCGCTCTTCGCGCCCGTGTGCCTCGAGGATTTGGACGAGCCGATCCAGCCGTGCCGCTCGCTCTGCGAGGGAGTCAGGAGCGCGTGCGCCCCCGTTATGGCCGCTTTTGGTTTTCCGTGGCCCGGCATGCTTGACTGCGCTCGATTCCCGGATGACAACGACCTGTGCATACCTCCCGCGGGCGCGGACACCGACACCGCGGGGCCGGTCACACAAGGAGTACCAAAGGTGTGTAATGCCTGCACAGAGAAGATGGAGGATGACAATGAAATTGTGGACAGTCTTTGCAAAAATGATTTTGTTCTGAAAATTAAGGTGAAGGAGATCTCCTACATGAACGGAGACACGAAGATCATTCCTGAAACCAAGAGCAAGACCATATACAAGTTGAATGGAGTGACAGAGCGTGAGCTGAGGAAGGCGCCTCTGTGGCTTAGAGATGGTCTGGAGTGCATGTGTGATGAGATGAGTGACATCAATGCCACCTACCTGGTGATGGGCCAGAATCTGGACGGGAACCTGGTGATCACAACACTGAAGCGCTGGCAGAAAGGACAGCGTGAGATTAAGCGCCTCTACCGCAGCATCCACAAACTGCAGTGCTGAGCGACGAGGATCTGGCAGCCACAAATCCAGCTCTGTCACAGATCTCCAAATCAACTAGCCACTGTCGTTGTCCTGCTACAGAGCTGTAGTAGTGAAACAAGAAACTTGAATCTAGTCTTTAAATAATCAAGAACTCATATCTGAAagccatgtaaatattttaggtGCAGTGCAGAAAAGTTTCATTGTGTCATATTTCTCCTTTCTATTTAGCTTTAACTCATAATTgcatattctgtttttatatctGTGTGATAGAATTTTCtagaaacacaataaaaacagtcaGAATCCTGATGTCACTCCAGCGGCAATGATTTTATATTCCAGTTTATATATTCCAGTTATATTACAGTTAAGTTGCtaagtgtattttgtgtgtgttttctacaGTGCTTTTTATCAGTATAAAGAGAGATAGCTGGCTATATTCTCATCAGTTTAAACCATAATAAGAGCGATTTCTTTGTTGTTGAAAGCCAGAATTCatgtgtttgagtgtttttcAGTGTCCTCCTGTATGTGAGACTAAAGGCTGCACTGTTTCTGTGTAAATCCCTTAAACCACAATCTGAGATCATctactgtttgtttatttcctgtCTGTCAGTTAGAATATCAGCATGAAGGTCTGTTTCTTGTTGTTCTCTTCTTTGGCTCTGTGAAATCTCACAATCATGGGCTTCGCTCTGGAATTTTTTCTTAATTCAATTGGttgcacattttattgcatTAAGGTTTTGTTTTAATCATTGTGTCCCTTGTTATTGTATAAATATTTCAGGAAGATGTTTGTTCTTGTAGTTTTAGAAGCAGCAGAAAGTCATCGCTTTTCCTTCATTGTTACAACTttgtattaatgtttattttaatgcttattttataGAGCTGTGATGAAATCTGTCACATATGACAAATGAAGAAGCGGAATAAAGACATGCAGAAAGCTTTGTTTGATCTGTTGTACAATTCATATATATGTTCATC

Function

NR:

description
PREDICTED: secreted frizzled-related protein 2

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG:

id description
K02176 SFRP2; secreted frizzled-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910834.2 True 2073 mRNA 0.46 3 4290072 4294136

Neighbor

gene id symbol gene type direction distance location
cntnap5a LOC108266700,LOC108425961 coding downstream 163579 4003726 ~ 4126493 (-)
gypc NA coding downstream 366798 3892480 ~ 3923274 (-)
parp14rs1 LOC108266413 coding downstream 505679 3770234 ~ 3784393 (-)
dnah7 dnah7 coding downstream 544690 3633992 ~ 3745382 (-)
tmeff2a tmeff2,tmeff2a,LOC107670719,LOC107728299 coding downstream 1229835 2968680 ~ 3060237 (-)
LOC113535176 NA coding upstream 38759 4332895 ~ 4333842 (-)
tmem163a tmem163a,LOC108266155,LOC107725256,LOC108425930,LOC107658221,LOC107684456,LOC107555363 coding upstream 119907 4414043 ~ 4469641 (-)
map3k19 map3k19 coding upstream 211155 4505291 ~ 4515439 (-)
mmadhcb mmadhc coding upstream 354084 4648220 ~ 4655253 (-)
LOC113535278 rnd3,LOC108266936,LOC103021440,LOC108425951,LOC103141407,LOC106582403,LOC107600972 coding upstream 474425 4768561 ~ 4777472 (-)
G76860 NA non-coding downstream 4249 4285623 ~ 4285823 (-)
G76858 NA non-coding downstream 5678 4283553 ~ 4284394 (-)
G76852 NA non-coding downstream 19727 4265653 ~ 4270345 (-)
G76845 NA non-coding downstream 47548 4242253 ~ 4242524 (-)
G76813 NA non-coding downstream 246876 4042934 ~ 4043196 (-)
G76899 NA non-coding upstream 64608 4358744 ~ 4361429 (-)
G77040 NA non-coding upstream 197787 4491923 ~ 4493719 (-)
G77107 NA non-coding upstream 311169 4605305 ~ 4605679 (-)
G77130 NA non-coding upstream 344211 4638347 ~ 4638551 (-)
G77291 NA non-coding upstream 558920 4853056 ~ 4879593 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 474013 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 1484209 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 1536266 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 2225774 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 2486427 1797982 ~ 1803645 (-)
G77283 NA other upstream 545824 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 1037448 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 1944819 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 2028907 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 2234910 6529046 ~ 6615660 (-)

Expression


Co-expression Network