atp5mc3a (atp5g3,LOC108266717,LOC108424356,LOC103027531,LOC105908030)


Basic Information

Item Value
gene id atp5mc3a
gene name atp5g3,LOC108266717,LOC108424356,LOC103027531,LOC105908030
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17556819 ~ 17560073 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911770.2
TTTGAAAGAAGCGACCTTGCGTGACGTCACGGGTTCATCCGGGACTTCTCGCAGAGCCAGTCGTGCGCAGGCGCAGTGCTTCCGGTGTTTCGACCTCTGCCTTCGACAGTCCCCGGCTGCTGCAATCctaagaggattaaaaaaaaatacacacacaccttaaattCCACAATGTACGCCTGTGCGAAATTCGTCTCTACACCTGCCCTGgtcCGCTCTGGATCCCGGGCTTTGTACAGACCCATGTCTGCCGCTGTACTGTCTAGGCCAGAGGTCAAAACAGAGGCTCCTGCTGCTCTGCTGCCCCAGTCTCCCCTCACCCAGGTGTGTCTGCGAGGCTTCCAGACCAGCGCAGTGAGCCGCGACATCGACACTGCCGCCAAGTTCATTGGAGCTGGAGCCGCCACAGTCGGAGTGGCTGGATCCGGTGCTGGAATTGGAACTGTCTTCGGCAGTCTGATCATTGGATATGCCAGgaACCCATCTCTGAAGCAGCAGCTCTTCTCGTATGCTATTCTGGGATTCGCTTTGTCTGAAGCCATGGGTCTCTTCTGTTTGATGGTTGCTTTCCTCATTCTGTTTGCCATGTAAAAACTTACTGCAAGTGGCAACGTACGCTGTACTCAATTGTGAATTCACAGTTGCTACCAAAAGTATCTGCTCTTAATTGTCCATGTAGAAAGAAATGCTCATTTTCAATGTCCACTCTCTCAAAagaataatgtattataaactTGTAAGcaattacaaaattaaaatgtgtatttgaaCTGTT
>XM_026911778.2
AGTCGTGCGCAGGCGCAGTGCTTCCGGTGTTTCGACCTCTGCCTTCGGTGAGTATCGGAGATTCTGCAGGGAAGCAAAAAAGTCAATCCTGCTTCATCCTCGCTCCATAGCGTCTCTTAACAGTCCCCGGCTGCTGCAATCctaagaggattaaaaaaaaatacacacacaccttaaattCCACAATGTACGCCTGTGCGAAATTCGTCTCTACACCTGCCCTGgtcCGCTCTGGATCCCGGGCTTTGTACAGACCCATGTCTGCCGCTGTACTGTCTAGGCCAGAGGTCAAAACAGAGGCTCCTGCTGCTCTGCTGCCCCAGTCTCCCCTCACCCAGGTGTGTCTGCGAGGCTTCCAGACCAGCGCAGTGAGCCGCGACATCGACACTGCCGCCAAGTTCATTGGAGCTGGAGCCGCCACAGTCGGAGTGGCTGGATCCGGTGCTGGAATTGGAACTGTCTTCGGCAGTCTGATCATTGGATATGCCAGgaACCCATCTCTGAAGCAGCAGCTCTTCTCGTATGCTATTCTGGGATTCGCTTTGTCTGAAGCCATGGGTCTCTTCTGTTTGATGGTTGCTTTCCTCATTCTGTTTGCCATGTAAAAACTTACTGCAAGTGGCAACGTACGCTGTACTCAATTGTGAATTCACAGTTGCTACCAAAAGTATCTGCTCTTAATTGTCCATGTAGAAAGAAATGCTCATTTTCAATGTCCACTCTCTCAAAagaataatgtattataaactTGTAAGcaattacaaaattaaaatgtgtatttgaaCTGTT

Function

symbol description
atp5g3 Predicted to enable ligand-gated channel activity. Predicted to be involved in ATP synthesis coupled proton transport and pore complex assembly. Predicted to act upstream of or within ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human ATP5MC3 (ATP synthase membrane subunit c locus 3).

NR:

description
PREDICTED: ATP synthase F(0) complex subunit C3, mitochondrial

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02128 ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911770.2 False 775 mRNA 0.49 5 17556819 17560073
XM_026911778.2 True 789 mRNA 0.49 5 17556819 17560015

Neighbor

gene id symbol gene type direction distance location
atf2 atf2,LOC107739459,LOC107671311,LOC107657392,LOC107742976 coding downstream 654 17529937 ~ 17556165 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC106590032 coding downstream 33768 17486048 ~ 17523051 (-)
LOC113547453 chrna1,LOC108266097 coding downstream 74810 17473115 ~ 17482009 (-)
wipf1a LOC108267026 coding downstream 84528 17465688 ~ 17472291 (-)
gpr155a gpr155 coding downstream 92543 17449880 ~ 17464276 (-)
lnpa lnpk coding upstream 107493 17667566 ~ 17679161 (-)
nfe2l2a nfe2l2,LOC107579917 coding upstream 321698 17881771 ~ 17896933 (-)
pde11a pde11a,LOC107671328,LOC107657382 coding upstream 376980 17937053 ~ 17991511 (-)
prkra prkra coding upstream 494715 18054788 ~ 18062269 (-)
casp10 NA coding upstream 508155 18068228 ~ 18076322 (-)
LOC117597450 NA non-coding downstream 125388 17407218 ~ 17431431 (-)
G84227 NA non-coding downstream 164872 17391684 ~ 17391947 (-)
G84189 LOC108266646 non-coding downstream 210469 17332492 ~ 17346350 (-)
G84182 NA non-coding downstream 231941 17324045 ~ 17324878 (-)
G84177 NA non-coding downstream 244864 17307569 ~ 17311955 (-)
G84394 NA non-coding upstream 166580 17726653 ~ 17727997 (-)
LOC117597384 NA non-coding upstream 180564 17740637 ~ 17744025 (-)
G84411 NA non-coding upstream 273302 17833375 ~ 17833589 (-)
G84881 NA non-coding upstream 571337 18131410 ~ 18131998 (-)
G84880 ino80d,LOC106582458 non-coding upstream 573329 18133402 ~ 18133689 (-)
sp3a sp3 other downstream 175647 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 516976 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1150341 16370227 ~ 16406478 (-)
G83554 NA other downstream 1335953 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 1480199 16043283 ~ 16076620 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 135217 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1353314 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1883018 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 2008676 19568749 ~ 19586103 (-)
G85848 NA other upstream 2666655 20226728 ~ 20237615 (-)

Expression


Co-expression Network