insig2 (insig2,LOC107549777,LOC107689500,LOC107670326,LOC107752584,LOC107720943)


Basic Information

Item Value
gene id insig2
gene name insig2,LOC107549777,LOC107689500,LOC107670326,LOC107752584,LOC107720943
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19675915 ~ 19681540 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912320.2
GGGGCGGAAGTGAACTGATCAAACCGATATACGCAGCCTTGGCACGGTGGAAGATTGTAAATAAAACTGACCTTAGCAAGCGATCTATTTACAACGTATTGGATTTCTGTTGGATACTGGATTGTCTTCTTTAGTTAgaaagagttttaaaaatgGTGTGGTGTGAAAACAGCTGACGGTGGTGGTACAGGAGTGGTGGATCATCTGGGCTCTGTTCTGTCACTGCCGCTATGGCAGAGGTCACCGGTGGTAATTTGATGTCCCGAAAGGGTCCCTACATAAGCATGATAACAAACCGCACAACTAACCTGCTGATCCGGGGGGCCATGCTGTTCGGCGTGGGTGTGTTCCTAGCGCTGGTGCTAAACCTGCTGCAGGTGCAGCGTAATGTCACTCTCTTCCCTCCTGATGTCATCAGTAGCATCTTTTCTTCAGCGTGGTGGGTACCACCTTGCTGTGGAACGgcatcagctctgATAGGGCTGCTGTATCCGTGTATAGACAGGCGTTTGGGAGAGCCCCATAAGCTGAAGCGCGAGTGGTCCAGTGTGATGCGCTGTGTGGCTGTCTTTGTTGGCATTAATCACGCCAGCGCTAAAGTGGACTTTGCAAATAATGTGCAGCTGTCTCTGACCCTGGCTGCACTCTCAGTGGGGTTGTGGTGGACATTTGACAGGTCACGCAGTGGCTTTGGCCTGGGAGTCGCCATTGCATTTCTTGCAACCCTCGTTACACAGCTACTGGTATACAATGGAGTGTTTCAgTATACATCTCCTGACTTCCTGTATATACGATCTTGGCTGCCCTGCATCTTCTTTGCTGGTGTGATAACCATAGGAAATATAGGAAGACAGCTTGCTCTTTATGAGTGTAAAGTTGTTCAGGAAAAGATTCATCAGGACTAAAACATCTTATACCATGGATGCAAAAACAAGGGGATCTGCATGAACTTGTACAGTTAAAGAGGTGCTCTCTTACAGCAGTACAGCCTCTCTGGAGCTTAAAAAAGCTGAAACTGGGATTGATTGACTGAAACATCTCTGAAAAGTGTTTCTTTAACTTGCATATGCATCTCTCTTGGATATGACGTGCCAAAGTGACTCAGACATGGCAGTTCTTTCTGGAATATTAACTCATGAGCTATGCTTCTGGTCTATATCTCTTACTCATATAAACTGATTCTTTCAGTGGGTGCTGCCAGACAGTGTTTTTCTAGGCATGAATAAGAATTACAGGTAGagcatactgtatactgtatacagagGTCAAACAATAGAAACAGAATCCTTAGCATgctcatatacagtactgtgcaaaggtcttagagacatggaaagaaatgctgtaaagcaaatatGCCTTTagatataatgaaattaaaacattgctataaaaagaaaatattacaaaGAGCAGTTAAGAGTAATagactaaacaaagtcaatatatGGTGTGATGacactttgctttaaaaaaaaacaaacaaacggtAGTCTCGGGTACAATTCGTGcaattttataaggaaattggctgataagttttactgagcatcttggagaatctgccacagttcttctggagactttgactgtcacacgttcttctttttttgcatgcaaaa
>XM_026912327.2
TGACGCCTGAGCTGCTCGCCTGATGTGGCTCGAGGCTCCATTCATCACGCTTTAACCAGATGTTAACTCACATCTGCTTCCTCAAGATGGTGTGGTGTGAAAACAGCTGACGGTGGTGGTACAGGAGTGGTGGATCATCTGGGCTCTGTTCTGTCACTGCCGCTATGGCAGAGGTCACCGGTGGTAATTTGATGTCCCGAAAGGGTCCCTACATAAGCATGATAACAAACCGCACAACTAACCTGCTGATCCGGGGGGCCATGCTGTTCGGCGTGGGTGTGTTCCTAGCGCTGGTGCTAAACCTGCTGCAGGTGCAGCGTAATGTCACTCTCTTCCCTCCTGATGTCATCAGTAGCATCTTTTCTTCAGCGTGGTGGGTACCACCTTGCTGTGGAACGgcatcagctctgATAGGGCTGCTGTATCCGTGTATAGACAGGCGTTTGGGAGAGCCCCATAAGCTGAAGCGCGAGTGGTCCAGTGTGATGCGCTGTGTGGCTGTCTTTGTTGGCATTAATCACGCCAGCGCTAAAGTGGACTTTGCAAATAATGTGCAGCTGTCTCTGACCCTGGCTGCACTCTCAGTGGGGTTGTGGTGGACATTTGACAGGTCACGCAGTGGCTTTGGCCTGGGAGTCGCCATTGCATTTCTTGCAACCCTCGTTACACAGCTACTGGTATACAATGGAGTGTTTCAgTATACATCTCCTGACTTCCTGTATATACGATCTTGGCTGCCCTGCATCTTCTTTGCTGGTGTGATAACCATAGGAAATATAGGAAGACAGCTTGCTCTTTATGAGTGTAAAGTTGTTCAGGAAAAGATTCATCAGGACTAAAACATCTTATACCATGGATGCAAAAACAAGGGGATCTGCATGAACTTGTACAGTTAAAGAGGTGCTCTCTTACAGCAGTACAGCCTCTCTGGAGCTTAAAAAAGCTGAAACTGGGATTGATTGACTGAAACATCTCTGAAAAGTGTTTCTTTAACTTGCATATGCATCTCTCTTGGATATGACGTGCCAAAGTGACTCAGACATGGCAGTTCTTTCTGGAATATTAACTCATGAGCTATGCTTCTGGTCTATATCTCTTACTCATATAAACTGATTCTTTCAGTGGGTGCTGCCAGACAGTGTTTTTCTAGGCATGAATAAGAATTACAGGTAGagcatactgtatactgtatacagagGTCAAACAATAGAAACAGAATCCTTAGCATgctcatatacagtactgtgcaaaggtcttagagacatggaaagaaatgctgtaaagcaaatatGCCTTTagatataatgaaattaaaacattgctataaaaagaaaatattacaaaGAGCAGTTAAGAGTAATagactaaacaaagtcaatatatGGTGTGATGacactttgctttaaaaaaaaacaaacaaacggtAGTCTCGGGTACAATTCGTGcaattttataaggaaattggctgataagttttactgagcatcttggagaatctgccacagttcttctggagactttgactgtcacacgttcttctttttttgcatgcaaaa

Function

symbol description
insig2 Predicted to enable lipid binding activity. Predicted to be involved in several processes, including SREBP signaling pathway; SREBP-SCAP complex retention in endoplasmic reticulum; and cholesterol biosynthetic process. Predicted to act upstream of or within cholesterol metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SREBP-SCAP-Insig complex. Predicted to be active in endoplasmic reticulum. Orthologous to human INSIG2 (insulin induced gene 2).

NR:

description
Insulin-induced gene 2 protein

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912320.2 True 1622 mRNA 0.43 6 19675915 19680687
XM_026912327.2 False 1556 mRNA 0.44 6 19675915 19681540

Neighbor

gene id symbol gene type direction distance location
tmem37 tmem37 coding downstream 107854 19565266 ~ 19568061 (-)
cobll1b cobll1 coding downstream 139511 19496806 ~ 19536404 (-)
fign fign,LOC107722902 coding downstream 303827 19330693 ~ 19372088 (-)
LOC113526240 kcnh7 coding downstream 426708 19184821 ~ 19249207 (-)
ifih1 ifih1 coding downstream 493012 19161216 ~ 19182903 (-)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632 coding upstream 11421 19692961 ~ 19702648 (-)
LOC113525964 dpp10,LOC108424244,LOC107569026,LOC107572644 coding upstream 104551 19786091 ~ 19876995 (-)
actr3 actr3,LOC103365687,LOC107660280,LOC101066039 coding upstream 223434 19904974 ~ 19918083 (-)
LOC113525902 LOC108266171 coding upstream 367251 20048791 ~ 20077583 (-)
fzd7a fzd7a,fzd7,LOC108267025,LOC107752890,LOC107668396,LOC107751502 coding upstream 398718 20080258 ~ 20083368 (-)
G85493 NA non-coding downstream 132065 19543611 ~ 19543850 (-)
G85459 NA non-coding downstream 197521 19464152 ~ 19478394 (-)
G85461 NA non-coding downstream 202594 19473006 ~ 19473321 (-)
G85460 NA non-coding downstream 208739 19464775 ~ 19467176 (-)
G85382 NA non-coding downstream 406963 19268662 ~ 19268952 (-)
G85749 NA non-coding upstream 222390 19903930 ~ 19904289 (-)
G85767 NA non-coding upstream 255367 19936907 ~ 19937123 (-)
G85768 NA non-coding upstream 255864 19937404 ~ 19937613 (-)
G85774 NA non-coding upstream 268051 19949591 ~ 19950708 (-)
G85782 NA non-coding upstream 293865 19975405 ~ 19976607 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 89812 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 181400 19443091 ~ 19494515 (-)
LOC113526313 baz2b other downstream 707423 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 1975935 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 2294743 17371979 ~ 17381172 (-)
G85848 NA other upstream 545188 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 712931 20394471 ~ 20423244 (-)
phgdh phgdh other upstream 1454506 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 1618332 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 1776193 21457733 ~ 21459404 (-)

Expression


Co-expression Network