dachd (dach1,LOC108266692,LOC108426032)


Basic Information

Item Value
gene id dachd
gene name dach1,LOC108266692,LOC108426032
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 10230762 ~ 10338500 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912436.2
ttttttttttctcggcGGAGCGCGCTGCTGTGGATTTCTCCTAACGAACTCGCGCGttacttttttctcttctttggGGGTTTTTGCCCACTTTTTGAACTTTACCGCGTGCTCGAGCTGACCATGGCCGTGCCGGCTGCTTTGATCCCCCCTTCCTCTCTGGTCCAGCCGTCTCCcatctcatcctcctcttcctcctcggTGAACACTTCATCACCGTCGGCCACCTCGTCTCCGTGTCCGTCGGTGGCTCCGGCCGCTGCGAACCCGTTCCGCTCGGAGCTGAGAGCGGCGGCAGGAAGCCCGGCCATACCGATCGCCGTCACTCCGTCTCCGCTCGCCTCCAAGCCCGTGTACTCGACCCCGTCGCCCGTGGAGAACACCCCGCAGAATAACGAGTGCAAGATGGTGGAGCTGAGGGGCGCGCAGGTGGCCTCGTTCACCGTGGACGGACGGGAGCTCATCTGCCTGCCGCAGGCCTTCGATCTGTTCCTGAAGCACCTGGTCGGCGGGCTGCACACCGTGTACACCAAGCTGAAGCGGCTCGAGATCACGCCCGTGGTGTGCAACGTGGAGCAGGTGCGCGTGCTGCGCGGCCTCGGCGCCATCCAGCCCGGCGTCAACCGCTGCAAGCTCATCTCCCGCAAAGACTTCGAGACGCTCTACAACGACTGCACCAATGCCAGCTCAAGACCCGGGAGGCCTCCGAAGAGGACCCAGAGTGTTACATCGCCAGAGAATCCTCACATAATGCCTCACACAGTGCCGGGCCTCATGTCTCCGGGAATCATTCCCCCTACAGGTCTTACAGCCGCAGCTGCTGCTGCAGCCGCCGCAACCAATGCTGCCATCGCCGAGGCCATGAAAGTGAAGAAGATCAAGCTGGAGGTGATGAGCAGTTACCACGCCAATAGCACACAGCATGGCGCCGACTCTGAGAACGGAGACCTCAGCTCCAGCGTGGGTTTGGAACTGCCATTCATGATGATGCCCCACCCCCTGATCCCTGTCAGCCTGCCTCCTGCGTCAGTCACCATGGCAATGAGTCAGATGAACCACCTCAGCACCATCGCCAATATGGCCGCCGCAGCACAGGGACAGAGTGCCCCTTCCAGAATGGTGACATCAGTGATTAAGgagCGGGTGCCTGACAGTCCCTCCCCTGCTCCCTCTCTGGAAGATGGCAGGAGGCCGGGAAGCCGGCCCTCGTCCCAGCGCAGCAGCAGCGTCTCCAGCTCACCCGCACACACCGAGAGCTCCTCCGACAGAATGCCTATTCATCAGAATGGGCTTGCCATGAACCAGGCTCTGTTGGGCCTTTCTCCCAGCATCCTGCCCGGCCCCAAGGAGGGTGACCTGGCCACTCACGACATTGGGCACGAGGCCAAGAGAATGCACTCTGAGAAAGAAGAAGCCCCTATGTGTACTCCAACAGCGAGGGACAGCTATGAGAGGTTGTCGTTGGCAGGTCAGGCTTTACCACCAGGGTTCCCGTCTCCTTTCCTGTTTCCTGACGGGCTATCATCAATAGAGACCCTACTGACCAACATTCAGGGTCTGCTGAAGGTGGCAATCGACAACGCTCGTGCTCAAGAGAAGCAAGTGCAACTGGAGAAAACTGAGCTGAAGATGGAGTTGTTTAGGGAGAGGGAACTTCGAGAGACTTTGGAGAAGCAGCTGGCCATGGAACAGAAGAACAGagCAATCATTCAGAAGCGCttgaagaaggagaagaaggctAAGAGGAAACTGCAGGAGGCGCTGGAGTACGAGTGTAAACGGCGGGAACAGGCAGAGCAGTCTCTCAAACAGAGCTCACCTACAGAGAGTCTCCGATCCCTGAATGACTCGTTGACCCAGGAGATAGAGACTGACCGCAGCAGTGGCAGAACAGATGCTGAAAGGACAATACAAGATGGAAGACTATTTTTGAAAACCACCGTGATGTACTGATGGGATGAAGTGGCGGACTAAGGAAATCTTTCATATGAAGATTAGAGAGACGTCATATGAAGTGTGCCCTCTCCAAGGGGCTTTTTAGTTACAAAAACAGGTCAAGCTGATGACAGAGGCTTCATGGAAGTGACTGAGTTTGTCCCACAGCCTAAAGGAAGGCCGTGGCAGAACGTAGAATTAGGATTCTTCTTCTCCAGTATCAACAATATATCATGACTGATTAACAATGGGGTTAAACATGTCAGCTGTTCTGAAGGCGACAATTTGAGCACAGTAAAATGTACCGTGAGGTACACATGGtgattatttacaaaaaaaaaatccacagcacTGAagatttttatactgtatttaaaaccAGCGAGAAAGCTTTGAAAAGAAATTCAGATCCAggggtttttgttttgtattgaaaaatgttaaaacctTAATGTCATATGTTAAAATTCCTagcttggagaaaaaaaaagcctctgaAAATGTGAATTTGAATATATGTTGATCGGTAGTAATGACTAATCTttgctttaaatgttttctaaattagaaaaaagaaaaatacaatcaagtttcatttttatcattGTTGTACATACAAGAACAAGAACTAGGTTAACCTGCTCACTTTGTTATGtgtatataaagtaaaaaaaaaaaagaaggtattGTGTATGCAGTAGATCTATTAGGAAAAACAATACCAACATTTATATTGAATTTATAGATTTGTTTCTGAGCCATTGTTCTTTCTGATAGCTGCCATTACGCTGAGGAAGCATGCAGGCATGTAAATGTTTGTCCTGAATTCCTGTTACTCAATAAATACTTAACTGTGCTGAAAAACTA
>XM_026912437.2
ttttttttttctcggcGGAGCGCGCTGCTGTGGATTTCTCCTAACGAACTCGCGCGttacttttttctcttctttggGGGTTTTTGCCCACTTTTTGAACTTTACCGCGTGCTCGAGCTGACCATGGCCGTGCCGGCTGCTTTGATCCCCCCTTCCTCTCTGGTCCAGCCGTCTCCcatctcatcctcctcttcctcctcggTGAACACTTCATCACCGTCGGCCACCTCGTCTCCGTGTCCGTCGGTGGCTCCGGCCGCTGCGAACCCGTTCCGCTCGGAGCTGAGAGCGGCGGCAGGAAGCCCGGCCATACCGATCGCCGTCACTCCGTCTCCGCTCGCCTCCAAGCCCGTGTACTCGACCCCGTCGCCCGTGGAGAACACCCCGCAGAATAACGAGTGCAAGATGGTGGAGCTGAGGGGCGCGCAGGTGGCCTCGTTCACCGTGGACGGACGGGAGCTCATCTGCCTGCCGCAGGCCTTCGATCTGTTCCTGAAGCACCTGGTCGGCGGGCTGCACACCGTGTACACCAAGCTGAAGCGGCTCGAGATCACGCCCGTGGTGTGCAACGTGGAGCAGGTGCGCGTGCTGCGCGGCCTCGGCGCCATCCAGCCCGGCGTCAACCGCTGCAAGCTCATCTCCCGCAAAGACTTCGAGACGCTCTACAACGACTGCACCAATGCCAGCTCAAGACCCGGGAGGCCTCCGAAGAGGACCCAGAGTGTTACATCGCCAGAGAATCCTCACATAATGCCTCACACAGTGCCGGGCCTCATGTCTCCGGGAATCATTCCCCCTACAGGTCTTACAGCCGCAGCTGCTGCTGCAGCCGCCGCAACCAATGCTGCCATCGCCGAGGCCATGAAAGTGAAGAAGATCAAGCTGGAGGTGATGAGCAGTTACCACGCCAATAGCACACAGCATGGCGCCGACTCTGAGAACGGAGACCTCAGCTCCAGCGTGGGTTTGGAACTGCCATTCATGATGATGCCCCACCCCCTGATCCCTGTCAGCCTGCCTCCTGCGTCAGTCACCATGGCAATGAGTCAGATGAACCACCTCAGCACCATCGCCAATATGGCCGCCGCAGCACAGGGACAGAGTGCCCCTTCCAGAATGGTGACATCAGTGATTAAGgagCGGGTGCCTGACAGTCCCTCCCCTGCTCCCTCTCTGGAAGATGGCAGGAGGCCGGGAAGCCGGCCCTCGTCCCAGCGCAGCAGCAGCGTCTCCAGCTCACCCGCACACACCGAGAGCTCCTCCGACAGAATGCCTATTCATCAGAATGGGCTTGCCATGAACCAGGCTCTGTTGGGCCTTTCTCCCAGCATCCTGCCCGGCCCCAAGGAGGGTGACCTGGCCACTCACGACATTGGGCACGAGGCCAAGAGAATGCACTCTGAGAAAGAAGCCCCTATGTGTACTCCAACAGCGAGGGACAGCTATGAGAGGTTGTCGTTGGCAGGTCAGGCTTTACCACCAGGGTTCCCGTCTCCTTTCCTGTTTCCTGACGGGCTATCATCAATAGAGACCCTACTGACCAACATTCAGGGTCTGCTGAAGGTGGCAATCGACAACGCTCGTGCTCAAGAGAAGCAAGTGCAACTGGAGAAAACTGAGCTGAAGATGGAGTTGTTTAGGGAGAGGGAACTTCGAGAGACTTTGGAGAAGCAGCTGGCCATGGAACAGAAGAACAGagCAATCATTCAGAAGCGCttgaagaaggagaagaaggctAAGAGGAAACTGCAGGAGGCGCTGGAGTACGAGTGTAAACGGCGGGAACAGGCAGAGCAGTCTCTCAAACAGAGCTCACCTACAGAGAGTCTCCGATCCCTGAATGACTCGTTGACCCAGGAGATAGAGACTGACCGCAGCAGTGGCAGAACAGATGCTGAAAGGACAATACAAGATGGAAGACTATTTTTGAAAACCACCGTGATGTACTGATGGGATGAAGTGGCGGACTAAGGAAATCTTTCATATGAAGATTAGAGAGACGTCATATGAAGTGTGCCCTCTCCAAGGGGCTTTTTAGTTACAAAAACAGGTCAAGCTGATGACAGAGGCTTCATGGAAGTGACTGAGTTTGTCCCACAGCCTAAAGGAAGGCCGTGGCAGAACGTAGAATTAGGATTCTTCTTCTCCAGTATCAACAATATATCATGACTGATTAACAATGGGGTTAAACATGTCAGCTGTTCTGAAGGCGACAATTTGAGCACAGTAAAATGTACCGTGAGGTACACATGGtgattatttacaaaaaaaaaatccacagcacTGAagatttttatactgtatttaaaaccAGCGAGAAAGCTTTGAAAAGAAATTCAGATCCAggggtttttgttttgtattgaaaaatgttaaaacctTAATGTCATATGTTAAAATTCCTagcttggagaaaaaaaaagcctctgaAAATGTGAATTTGAATATATGTTGATCGGTAGTAATGACTAATCTttgctttaaatgttttctaaattagaaaaaagaaaaatacaatcaagtttcatttttatcattGTTGTACATACAAGAACAAGAACTAGGTTAACCTGCTCACTTTGTTATGtgtatataaagtaaaaaaaaaaaagaaggtattGTGTATGCAGTAGATCTATTAGGAAAAACAATACCAACATTTATATTGAATTTATAGATTTGTTTCTGAGCCATTGTTCTTTCTGATAGCTGCCATTACGCTGAGGAAGCATGCAGGCATGTAAATGTTTGTCCTGAATTCCTGTTACTCAATAAATACTTAACTGTGCTGAAAAACTA

Function

symbol description
dach1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of cell migration and negative regulation of cellular macromolecule biosynthetic process. Predicted to be located in cytoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus.

NR:

description
dachshund homolog 1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912436.2 True 2802 mRNA 0.51 11 10230762 10338500
XM_026912437.2 False 2799 mRNA 0.51 11 10230762 10338500

Neighbor

gene id symbol gene type direction distance location
clybl clybl,LOC107681316,LOC107748615,LOC107600379 coding downstream 66465 10097231 ~ 10164297 (-)
si:ch211-168k14.2 si:ch211-168k14.2,LOC108266656,LOC108441415,LOC107681321,LOC107748618,LOC107600399,LOC105905900 coding downstream 155924 9912923 ~ 10074838 (-)
zic2a zic2,LOC106586042 coding downstream 158123 10068484 ~ 10072639 (-)
itgbl1 itgbl1,LOC107690616,LOC107748609,LOC107731761,LOC107600373,LOC107569583 coding downstream 403203 9777668 ~ 9827559 (-)
pikfyve pikfyve coding downstream 603332 9598239 ~ 9627430 (-)
klf12b klf12,LOC107681319,LOC107720110,LOC107668887,LOC107740907,LOC107600382 coding upstream 48869 10387369 ~ 10425163 (-)
tbc1d4 tbc1d4 coding upstream 114497 10452997 ~ 10483869 (-)
commd6 commd6 coding upstream 153430 10491930 ~ 10495773 (-)
lamp1b LOC108266564 coding upstream 163455 10501955 ~ 10505784 (-)
pou2f1b LOC108266565,LOC108426038 coding upstream 178707 10517207 ~ 10538871 (-)
G79903 NA non-coding downstream 453373 9775806 ~ 9777389 (-)
G79933 NA non-coding downstream 457485 9772634 ~ 9773277 (-)
LOC113525888 NA non-coding downstream 464186 9764485 ~ 9766576 (-)
G79923 NA non-coding downstream 472593 9757930 ~ 9758169 (-)
G79920 NA non-coding downstream 474797 9755741 ~ 9755965 (-)
LOC117597353 NA non-coding upstream 283037 10621537 ~ 10622344 (-)
LOC113526087 NA non-coding upstream 380634 10719134 ~ 10721674 (-)
G80463 LOC108266368 non-coding upstream 433888 10772388 ~ 10775221 (-)
G80464 NA non-coding upstream 437542 10776042 ~ 10776341 (-)
G80526 NA non-coding upstream 570673 10909173 ~ 10931379 (-)
si:dkey-83m22.7 NA other downstream 576307 9632685 ~ 9654455 (-)
G79826 NA other downstream 661642 9568555 ~ 9569120 (-)
LOC113525856 mob4,hspe1,LOC108266284,LOC106582314,LOC106586370,LOC105016277,LOC101078365,LOC101472107,LOC104932517,LOC103156730,LOC106530744,LOC100701317,LOC102310674,LOC103391647,LOC108238849,LOC107690609,LOC107731766 other downstream 699091 9520729 ~ 9531671 (-)
cnga4 cnga4 other downstream 1082115 9099536 ~ 9148647 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other downstream 1211314 8996783 ~ 9019448 (-)
LOC113526229 nxpe3 other upstream 256940 10595440 ~ 10614287 (-)
G80600 NA other upstream 630917 10969417 ~ 10971157 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other upstream 679779 11018279 ~ 11035561 (-)
LOC113546407 NA other upstream 959368 11297868 ~ 11302844 (-)
mphosph8 mphosph8,LOC107658258 other upstream 1111712 11450212 ~ 11460325 (-)

Expression


Co-expression Network