gcgb (gcg,gcgb,LOC107730589,LOC107677918,LOC107722905,LOC107674768)


Basic Information

Item Value
gene id gcgb
gene name gcg,gcgb,LOC107730589,LOC107677918,LOC107722905,LOC107674768
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19144192 ~ 19145405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912485.2
CTCCTGGGAGCCTGATAAGACGCCAGCATACACCAGCACCCTCTCTCTATCATCCTTCTGTTTCTTCCTTTTGGCAGTCAATCTACAGGGAGCAGAATGAAGAGCATCCAGTATTTGGCTGGACTTCTACTTCTCATCATTGTACAAAACAGTTGGCAAATTCCCATCGAGGACACAGAGGAAAATTCCAGTGTAATGTTAGAAGACACGCTATTCAATAATCCAACTAACATGAAGAGGCACTCAGAAGGAACATTCTCAAACGATTACAGCAAATATCTGGAGACCAGAAGAGCTCAGGATTTTATACAATGGCTGATGAACTCAAAGAGAAGTGGTTCCCACACAAGACGGCATGCAGACGGCACATACACCAGCGACGTGAGCTCATACATGCAAGACCAGGCAGCCAAGGAGTTTGTGTCCTGGCTGAAAATggggagagggagaagagagtAGAGAAGCACTGCATACCTTTTACACTGGAAAGAGACACTCTGCAACACTCTGTTGGACCATCCTATTCTATCATACCATATTTTATAAGGAACTGTGGTGTCATTGcctaaaacaaaatgtgtttgAAATAAATCTCTGTTGAACCTAA

Function

symbol description
gcgb Predicted to enable glucagon receptor binding activity. Predicted to be involved in response to starvation. Predicted to be located in extracellular region. Is expressed in glucagon secreting cell. Human ortholog(s) of this gene implicated in Alzheimer's disease and prediabetes syndrome. Orthologous to human GCG (glucagon).
gcg Enables gastric inhibitory polypeptide receptor binding activity and identical protein binding activity. Predicted to be involved in several processes, including positive regulation of bicellular tight junction assembly; positive regulation of insulin secretion involved in cellular response to glucose stimulus; and protein kinase A signaling. Predicted to act upstream of or within negative regulation of execution phase of apoptosis; positive regulation of gluconeogenesis; and positive regulation of histone H3-K4 methylation. Predicted to be located in cytoplasm. Predicted to be active in extracellular space. Implicated in Alzheimer's disease and prediabetes syndrome.

NR:

description
PREDICTED: glucagon-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912485.2 True 607 mRNA 0.44 4 19144192 19145405

Neighbor

gene id symbol gene type direction distance location
LOC113525848 rbms1,LOC108266580,LOC105908026,LOC107730583 coding downstream 99536 18992048 ~ 19044656 (-)
cd302 cd302 coding downstream 159499 18978187 ~ 18984693 (-)
spc25 spc25 coding downstream 387972 18751914 ~ 18756220 (-)
stk39 stk39,LOC107707604,LOC107708317 coding downstream 440644 18670051 ~ 18703548 (-)
csrnp3 csrnp3,LOC107674773,LOC107722915 coding downstream 646783 18468952 ~ 18497409 (-)
fap LOC108267048,LOC108424318 coding upstream 1710 19147115 ~ 19160623 (-)
ifih1 ifih1 coding upstream 15811 19161216 ~ 19182903 (-)
LOC113526240 kcnh7 coding upstream 39416 19184821 ~ 19249207 (-)
fign fign,LOC107722902 coding upstream 185288 19330693 ~ 19372088 (-)
cobll1b cobll1 coding upstream 351401 19496806 ~ 19536404 (-)
G85211 NA non-coding downstream 91142 19051398 ~ 19053050 (-)
G85205 NA non-coding downstream 105760 19038227 ~ 19038432 (-)
G85069 NA non-coding downstream 475981 18667991 ~ 18668211 (-)
G84975 xirp2 non-coding downstream 588327 18540353 ~ 18555865 (-)
G84883 LOC108266575,LOC108424342 non-coding downstream 1007109 18135669 ~ 18137083 (-)
G85382 NA non-coding upstream 123257 19268662 ~ 19268952 (-)
G85459 NA non-coding upstream 318747 19464152 ~ 19478394 (-)
G85460 NA non-coding upstream 319370 19464775 ~ 19467176 (-)
G85461 NA non-coding upstream 327601 19473006 ~ 19473321 (-)
G85493 NA non-coding upstream 398206 19543611 ~ 19543850 (-)
LOC113526313 baz2b other downstream 175700 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 1444212 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 1763020 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 2104349 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 2737714 16370227 ~ 16406478 (-)
grb14 grb14 other upstream 297686 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 423344 19568749 ~ 19586103 (-)
G85848 NA other upstream 1081323 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 1249066 20394471 ~ 20423244 (-)
phgdh phgdh other upstream 1990641 21136046 ~ 21144621 (-)

Expression


Co-expression Network