pdzk1 (pdzk1)


Basic Information

Item Value
gene id pdzk1
gene name pdzk1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 12085115 ~ 12090514 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912569.2
ATGGCTGGGCCAAAACCTCGAGTGATTGCACTTTCCAAGCGTGAAGGCCAGAGCTATGGCTTCTACCTGAGGATTGAGGAGGGGGCAGAAGGTCATTTGGTTCGGGCGTTGGAGATGGGTGGTCCTGCTGAACTAGCTGGTCTCAAGGATGGAGATCGCATTATCAGAGTCAATGGAACCTTTGTGGACAACCTGGAACACAGCCAGGTTGCAGATCTGGTTAAGAAAAGTGGATTGACTGTCACATTCCATGTCCTGGGAGAGGAAGCATACCAGCAGGCCAAAAGAAATGGCATAAACCTTGCAGAACCACAGTCCTATTCTGCTCAGAGTCAGCCCACCATGAACGGAGTTCCTGCAGCAGGCCCTAAACTCAAACTCTGCTTTCTGCTGAAGTCCAGCAGTGGCTTTGGTTTCTCGATCAAGTCCTGTAAAGGTCCAGAGGGAATGTTCATGACGGATGTGATTGTGGGAGGGGCGGCTGATAATGCGGGGGTTAAGGCAGGTGATCGTCTGGTGGAGATCAATGGAGAAAATGTAGAAGGCGCTACACATGATCAAACTGTGGAAAAAGTCAAAGCTGcgggaaaaagtgtgatgtttTTACTCGTGGACAAGGACACAGACAAATACTACAAGAATAAATGCATCAGACTGGGAACTGGACTGGCCACAACGAAGCACCTACCAATGAATCCTCGCATAGTTGAAATCACCAAGGGAGCCAGTGGTTATGGCTTCTTCCTTAAGGCAGACCCTAAAACTCCAGGTCATTTCATTGGAGAAATCGACCGTGGGAGTCCTGCAGAAAAAGGGGGACTGAAGGAGATGGACCAGCTGGTggctgtggatggagaggaggttAATCACTGTACCCATGAGCAAGTGGTGGATAAAATACGTGAGCTCGGAAATCGATGCTGCCTCCTGGTGGTTGATGCTGAAACAGACAAGATGTACAAGATGggtggTGTCTCTCCTTTACTTTATTGGGAGGAAATGAGGAGTTCCCTTCCTCAGATGAGCAATCCTGAGCCTGAACATAATGTCACCCCAGTCCCAGCCATGGCTGACGCTCCTGAGGTAATATATAAACCCAAATTGTGCCGCATGGAAAAGGGCGCTGCTGGATACGGCTTCCACCTCAATGGTATCCAAGGAGTGCATGGACAATATATCAAAGAGGTGGTGAAAGGAGGACCAGCAGACAGAGCAGGGCTAGAGGATGAAGACATTGTGGTGGAGGTCAATGGGGTGAACATAGAGGAAAGCACGCATGAGGAGGCTGTGAATCTGATCCGCAGCAGTGGTGACACATTGGTCCTCCTTGTAGCAGGGAAAGCTGCTTATGAGCACCTGAAAGCTAAGGGAGTTGCAATTACCCCCAAGCCGCTGGATACCGAACAAACACCAGTTCAGCCTCGTGAAAGGACACCCTCTGTTTCATCTACATCCTCATCAGAAAGTGAAGATGAGAGGCTCTGAAAGATGTTTTCCAGTTGCTGGGTTATATTTATATGGTGGTACACCAAGTTGcacatataaattaaaaaaaagcttatatTATAAGTAGTCAATAATTGCACTGCTGAAAAAGACAGTCTTTTAAATGGAAAGCAGTCATATACTCTGTTCTTGCAGACTACAGGAGTTTACCAATCTACAAATAACgctggaaaataaaaagaagcagaagcagtaataataaatactgcATCAGATCAGAGTTAACATTTTCCAAACAAATCCGTGCATGTtcttttatatgtgtgtgatatGACGCAGATAAGACAGATCTCACacaagaaaaaagaacacaaactgTCTTAAATCATGCCATTGTCACATGTGTGTTGATTGTGTAAGACCCTCTGATGCCTTTCATATGCAAACTTTACCCTCTTTGCACCTGTTTATCTCTACTtcagtgcattaaaaaaacGTTCACCGTGTTAATATTTAGAGCCTAGATCTTCAGCAGTGAGCTACACACTCTGCTTGGGATGCTGTATGAAGTAATAAAAACTCActagtaaataaaaatttgcaTAATCA
>XM_026912570.2
AGGCATGAGATGTGGTTAAATACCTCACCATTTAAGTGAACCTTTGTTCTGTCAAAGTCCATTACACACTTGTGCATGGCTAAATAACACTTGCAAAAAAGATGTAAGTGCTTCCTTTAGGCTGGGACATCAACGGGACGGGAACAGGAGAATAATGGCTGGGCCAAAACCTCGAGTGATTGCACTTTCCAAGCGTGAAGGCCAGAGCTATGGCTTCTACCTGAGGATTGAGGAGGGGGCAGAAGGTCATTTGGTTCGGGCGTTGGAGATGGGTGGTCCTGCTGAACTAGCTGGTCTCAAGGATGGAGATCGCATTATCAGAGTCAATGGAACCTTTGTGGACAACCTGGAACACAGCCAGGTTGCAGATCTGGTTAAGAAAAGTGGATTGACTGTCACATTCCATGTCCTGGGAGAGGAAGCATACCAGCAGGCCAAAAGAAATGGCATAAACCTTGCAGAACCACAGTCCTATTCTGCTCAGAGTCAGCCCACCATGAACGGAGTTCCTGCAGCAGGCCCTAAACTCAAACTCTGCTTTCTGCTGAAGTCCAGCAGTGGCTTTGGTTTCTCGATCAAGTCCTGTAAAGGTCCAGAGGGAATGTTCATGACGGATGTGATTGTGGGAGGGGCGGCTGATAATGCGGGGGTTAAGGCAGGTGATCGTCTGGTGGAGATCAATGGAGAAAATGTAGAAGGCGCTACACATGATCAAACTGTGGAAAAAGTCAAAGCTGcgggaaaaagtgtgatgtttTTACTCGTGGACAAGGACACAGACAAATACTACAAGAATAAATGCATCAGACTGGGAACTGGACTGGCCACAACGAAGCACCTACCAATGAATCCTCGCATAGTTGAAATCACCAAGGGAGCCAGTGGTTATGGCTTCTTCCTTAAGGCAGACCCTAAAACTCCAGGTCATTTCATTGGAGAAATCGACCGTGGGAGTCCTGCAGAAAAAGGGGGACTGAAGGAGATGGACCAGCTGGTggctgtggatggagaggaggttAATCACTGTACCCATGAGCAAGTGGTGGATAAAATACGTGAGCTCGGAAATCGATGCTGCCTCCTGGTGGTTGATGCTGAAACAGACAAGATGTACAAGATGggtggTGTCTCTCCTTTACTTTATTGGGAGGAAATGAGGAGTTCCCTTCCTCAGATGAGCAATCCTGAGCCTGAACATAATGTCACCCCAGTCCCAGCCATGGCTGACGCTCCTGAGGTAATATATAAACCCAAATTGTGCCGCATGGAAAAGGGCGCTGCTGGATACGGCTTCCACCTCAATGGTATCCAAGGAGTGCATGGACAATATATCAAAGAGGTGGTGAAAGGAGGACCAGCAGACAGAGCAGGGCTAGAGGATGAAGACATTGTGGTGGAGGTCAATGGGGTGAACATAGAGGAAAGCACGCATGAGGAGGCTGTGAATCTGATCCGCAGCAGTGGTGACACATTGGTCCTCCTTGTAGCAGGGAAAGCTGCTTATGAGCACCTGAAAGCTAAGGGAGTTGCAATTACCCCCAAGCCGCTGGATACCGAACAAACACCAGTTCAGCCTCGTGAAAGGACACCCTCTGTTTCATCTACATCCTCATCAGAAAGTGAAGATGAGAGGCTCTGA

Function

symbol description
pdzk1 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in protein localization to plasma membrane. Predicted to be active in apical plasma membrane. Is expressed in gut; intestinal bulb; pronephric duct; pronephric proximal convoluted tubule; and pronephric proximal straight tubule. Orthologous to several human genes including PDZK1 (PDZ domain containing 1).

NR:

description
PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF3

GO: NA

KEGG:

id description
K24057 PDZK1, PDZD1; DZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912569.2 True 2055 mRNA 0.45 8 12085115 12088620
XM_026912570.2 False 1639 mRNA 0.49 9 12085685 12090514

Neighbor

gene id symbol gene type direction distance location
st6gal2a st6gal2 coding downstream 35414 12015445 ~ 12049701 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding downstream 89449 11966494 ~ 11995666 (-)
fhl2a fhl2a,fhl2,LOC108266723,LOC107716797,LOC108431475,LOC107676452,LOC107688730 coding downstream 190035 11887868 ~ 11895080 (-)
mfsd9 mfsd9,LOC106581991 coding downstream 328253 11748026 ~ 11756862 (-)
LOC113524909 inpp4a,LOC107676472,LOC107602877 coding downstream 347371 11710608 ~ 11737744 (-)
col4a1 col4a1 coding upstream 453265 12543779 ~ 12589550 (-)
LOC113525968 LOC108261035 coding upstream 566539 12657053 ~ 12661141 (-)
sema5ba sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding upstream 685712 12776226 ~ 12873123 (-)
adcy5 adcy5,LOC107660638,LOC107555914,LOC107661140,LOC107596066 coding upstream 850719 12941233 ~ 13011343 (-)
hacd2 hacd2,LOC107660639,LOC107741899 coding upstream 923011 13013525 ~ 13021552 (-)
G81222 NA non-coding downstream 33343 12051418 ~ 12051772 (-)
G81221 NA non-coding downstream 34461 12050367 ~ 12050654 (-)
G81220 NA non-coding downstream 39640 12041634 ~ 12045475 (-)
LOC117597344 NA non-coding downstream 227848 11844876 ~ 11857267 (-)
LOC113526311 NA non-coding downstream 321396 11760451 ~ 11763719 (-)
G81243 NA non-coding upstream 24593 12115107 ~ 12115359 (-)
LOC113546902 NA non-coding upstream 117495 12208009 ~ 12210224 (-)
G81413 NA non-coding upstream 205833 12296347 ~ 12296635 (-)
G81520 NA non-coding upstream 343853 12434367 ~ 12434572 (-)
G81612 col4a2,LOC108261033 non-coding upstream 563822 12654336 ~ 12655862 (-)
mphosph8 mphosph8,LOC107658258 other downstream 624790 11450212 ~ 11460325 (-)
LOC113546407 NA other downstream 782271 11297868 ~ 11302844 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other downstream 1049554 11018279 ~ 11035561 (-)
G80600 NA other downstream 1113958 10969417 ~ 10971157 (-)
LOC113526229 nxpe3 other downstream 1470828 10595440 ~ 10614287 (-)
irs2b irs2 other upstream 392147 12482661 ~ 12507688 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other upstream 622551 12713065 ~ 12728037 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other upstream 1101200 13191714 ~ 13250548 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other upstream 1671903 13762417 ~ 13855186 (-)
med14 med14,LOC107756768 other upstream 2448354 14538868 ~ 14553495 (-)

Expression


Co-expression Network