slc15a1a (slc15a1,LOC108239716,LOC101165016)


Basic Information

Item Value
gene id slc15a1a
gene name slc15a1,LOC108239716,LOC101165016
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18163180 ~ 18174048 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912589.2
CCTTTACACTGTGGGTTCTGTAGACACACCAGTCTTTTCATCCACTGTCACTCAGCAGGTTACACGCGCAACCATGACGGACAAAGAGAAGAATGATGATAAGAAACCAAAGAAGagtgtggAATGCTGTGGTTATCCAGTCAGTATATTTTTCATCGTTGTCAACGAGTTTTGTGAGAGATTCTCCTACTATGGAATGCGTGCGGTGCTGGTGCTGTACTTCAGGTACTTCCTGCGTTGGGATGACGACCTTGCCACCTCCATCTATCACGCTTTTGTGGCCCTGTGCTACCTGACTCCCATACTAGGTGCCATCGTGGCTGACTCATGGCTTGGAAAGTTTAAAACCATCATCTACCTGTCCATTGTGTATGCCATTGGCCAGGTCATCATGGCAGTCAGTGCTATTCATGACATCACCGACACAAACAGAGACGGTACACCAGACAATATGGCAGTGCATGTCGCCTTGGCTATGATAGGGCTGATCCTCATTGCTCTTGGTACAGGTGGCATCAAACCCTGTGTGTCTGCATTTGGAGGAGATCAGTTTGAGGACCACCAGGCGAGGCAGCGAAGTACGTTCTTCTCTGTGTTCTATCTGTGTATTAATGCTGGCAGTCTCCTCTCCACCCTCATCACCCCCATACTCCGAGGTCAGGAGTGTGGTATTCACAGTACACAGAAATGCTACCCGCTAGCTTTTGGTGTTCCTGCAGCCCTCATGGTGGTCTCTCTGGTTGTGTTCATTGCTGGCAGTGGTATGTATGTTAAAGCTGCACCCAAGGGCAACATTATGCTGGATGTGTCTAAATGCATTGGGTTTGCTATTAAGAACCGTTTCAGACACAGGAGCAGTAAATACCCAAAGAGAGAGCACTGGCTGGACTGGGCTGATGAGAAATACGATAAACTCCTCATTGCTCAAATTAAGATGGTGCTCAAAGTGCTGTTCCTCTACATCCCTCTCCCAATGTTCTGGACCCTATTTGACCAAAAGGGCTCCCGGTGGACCCTCCAAGCCACCACCATGGATGGGACCTTTGGAACACTGGTTCTGCAGCCAGATCAGATGCAGACAGTGAACCCCATTTTGATTCTCACCCTGGTGCCTATCATGGACCGAGTTGTGTATCCTCTCATCAGAAAGTGTGGCTTCAACTTCACCCCTTTGAAGAGAATGACTGTTGGGATGTTTTTGGCTGCTATGGCTTTTGTGTCTGCAGCTCTGGTCCAGATTCAGATCGATAAAACACTGCCAGTTTTCCCATCCTCTACACAAAGTCAGCTGAAGGTAGTGAACATGGGAAGTGCTCAGCTCCAAATCAACATCCCTCCCAACACACCTGTTCTGCTCGGATCCTTGcagGCCAGTGAGGACTACATGACATTTGACACTCCAGATATTACAGTTTCTTTGAACACAAATCCTGTGATCAATAAAACCTTCACCCTGAGTTTGGGACAGCGCCAGACCCTCATCATTCCTTCTGATCCTAATGCCATGTATCTGACAAAAGATTTAACCTCCAAACCAGAGCAAGGCAACAATGCAGTCAGATTTGTAAATGGTATGACTACAGCACTTAATGTTTCAAATGTTGCACTCATCAACCCATCAGATGTTTCAAACAACACACTGGTTCCACAGGGGTCTCGGACGTTCACCATCACTGACGGTGGGCAATCTTGTCAGTTCTCGGCACAGTTTGGGTTTGGAGGAGCTTACACCTTCCTTATCCCCAGCACGCTGAGCTGGactgaaaattgtggagGCTCTATAGTGAGAGTGGAAGATATTCAGCCCAATACTGTGCACATGGCGCTTCAGATCCCTCAGTATTTCCTCATCACTGCAGGAGAAGTGGTGTTCTCCGTCACTGGCCTGGAATTCTCGTACTCACAGGCCCCCAGCAACATGAAGGCAGTGCTGCAGGCCGGCTGGCTCCTCACTGTGGCTGTGGGAAACTTCATTGTGCTGATTGTGGCAGAGCTGGCAAAGCTACCTGACAAGTGGGCGGAGTATGTGCTGTTTGCTTCTCTGTTAGTGGCAGTGTGTATAATCTTTTCAATAATGGCTTATTTCTACACCTACATCGACCCTGCTGAGATTGAAGCCAAGTTCAAGGAAAACAAAGAGCTGGAACCAGATGagaaagaagcaaaagaaaGTAAAGCTATAGAGATGGAAACACATAAGACATTGCAAAACCAAGACGATGAAACCAAAATGACTAAAATctgattaaattattatttaacccACCATGTACCATCCAAAGACTAGATTATCATAGCAGGTGTCAATTTCTGATATCTTTAAACATGTATCAGTGTGCTTACAGACACTATGAGTGCCAGAAATAAATGTCATGTGCATAGATTCAGAAGACAAAGTTTATAGATAGAGCTGCTCAAAGTGAACAACCAAAATGAAAGTATGGTGAACTGTgaaacaatattattatatacagactaatgtattttataaataaatgtatctataCCAATTTGTTAAACTGTAGAAAACCCTGTGAaaactgtgggaaaaaaaactatatcACAATTACCGTAAAGGCACAAGCTAACACATATTTAGAATTTTACAGTTGTTTCTAAAAGTGTTAGTGAACATGAAATCTTACATTGACTCTGTTAAATAAACTAAGCATCTGTTTTATGGATACAGTTCAACAAGTGAACTAATTTACACTGTTAATCATTTACATTGCTCATTAAAACAGTCATTTAAGTCCA
>XM_026912590.2
CCTTTACACTGTGGGTTCTGTAGACACACCAGTCTTTTCATCCACTGTCACTCAGCAGGTTACACGCGCAACCATGACGGACAAAGAGAAGAATGATGATAAGAAACCAAAGAAGagtgtggAATGCTGTGGTTATCCAGTCAGTATATTTTTCATCGTTGTCAACGAGTTTTGTGAGAGATTCTCCTACTATGGAATGCGTGCGGTGCTGGTGCTGTACTTCAGGTACTTCCTGCGTTGGGATGACGACCTTGCCACCTCCATCTATCACGCTTTTGTGGCCCTGTGCTACCTGACTCCCATACTAGGTGCCATCGTGGCTGACTCATGGCTTGGAAAGTTTAAAACCATCATCTACCTGTCCATTGTGTATGCCATTGGCCAGGTCATCATGGCAGTCAGTGCTATTCATGACATCACCGACACAAACAGAGACGGTACACCAGACAATATGGCAGTGCATGTCGCCTTGGCTATGATAGGGCTGATCCTCATTGCTCTTGGTACAGGTGGCATCAAACCCTGTGTGTCTGCATTTGGAGGAGATCAGTTTGAGGACCACCAGGCGAGGCAGCGAAGTACGTTCTTCTCTGTGTTCTATCTGTGTATTAATGCTGGCAGTCTCCTCTCCACCCTCATCACCCCCATACTCCGAGGTCAGGAGTGTGGTATTCACAGTACACAGAAATGCTACCCGCTAGCTTTTGGTGTTCCTGCAGCCCTCATGGTGGTCTCTCTGGTTGTGTTCATTGCTGGCAGTGGTATGTATGTTAAAGCTGCACCCAAGGGCAACATTATGCTGGATGTGTCTAAATGCATTGGGTTTGCTATTAAGAACCGTTTCAGACACAGGAGCAGTAAATACCCAAAGAGAGAGCACTGGCTGGACTGGGCTGATGAGAAATACGATAAACTCCTCATTGCTCAAATTAAGATGGTGCTCAAAGTGCTGTTCCTCTACATCCCTCTCCCAATGTTCTGGACCCTATTTGACCAAAAGGGCTCCCGGTGGACCCTCCAAGCCACCACCATGGATGGGACCTTTGGAACACTGGTTCTGCAGCCAGATCAGATGCAGACAGTGAACCCCATTTTGATTCTCACCCTGGTGCCTATCATGGACCGAGTTGTGTATCCTCTCATCAGAAAGTGTGGCTTCAACTTCACCCCTTTGAAGAGAATGACTGTTGGGATGTTTTTGGCTGCTATGGCTTTTGTGTCTGCAGCTCTGGTCCAGATTCAGATCGATAAAACACTGCCAGTTTTCCCATCCTCTACACAAAGTCAGCTGAAGGTAGTGAACATGGGAAGTGCTCAGCTCCAAATCAACATCCCTCCCAACACACCTGTTCTGCTCGGATCCTTGcagGCCAGTGAGGACTACATGACATTTGACACTCCAGATATTACAGTTTCTTTGAACACAAATCCTGTGATCAATAAAACCTTCACCCTGAGTTTGGGACAGCGCCAGACCCTCATCATTCCTTCTGATCCTAATGCCATGTATCTGACAAAAGATTTAACCTCCAAACCAGAGCAAGGCAACAATGCAGTCAGATTTGTAAATGGTATGACTACAGCACTTAATGTTTCAAATGTTGCACTCATCAACCCATCAGATGTTTCAAACAACACACTGGTTCCACAGGGGTCTCGGACGTTCACCATCACTGACGGTGGGCAATCTTGTCAGTTCTCGGCACAGTTTGGGTTTGGAGGAGCTTACACCTTCCTTATCCCCAGCACGCTGAGCTGGactgaaaattgtggagGCTCTATAGTGAGAGTGGAAGATATTCAGCCCAATACTGTGCACATGGCGCTTCAGATCCCTCAGTATTTCCTCATCACTGCAGGAGAAGTGGTGTTCTCCGTCACTGGCCTGGAATTCTCGTACTCACCAGGCCCCCAGCAACATGAAGGCAGTGCTGCAGGCCGGCTGGCTCCTCACTGTGGCTGTGGGAAACTTCATTGTGCTGATTGTGGCAGAGCTGGCAAAGCTACCTGACAAGTGGGCGGAGTATGTGCTGTTTGCTTCTCTGTTAGTGGCAGTGTGTATAATCTTTTCAATAATGGCTTATTTCTACACCTACATCGACCCTGCTGAGATTGAAGCCAAGTTCAAGGAAAACAAAGAGCTGGAACCAGATGagaaagaagcaaaagaaaGTAAAGCTATAGAGATGGAAACACATAAGACATTGCAAAACCAAGACG

Function

symbol description
slc15a1 Enables dipeptide transmembrane transporter activity and peptide:proton symporter activity. Involved in dipeptide import across plasma membrane. Part of plasma membrane.

NR:

description
solute carrier family 15 member 1

GO:

id name namespace
GO:0006857 oligopeptide transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14206 SLC15A1, PEPT1; solute carrier family 15 (oligopeptide transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912589.2 True 2757 mRNA 0.44 23 18163180 18174048
XM_026912590.2 False 2220 mRNA 0.48 23 18163718 18174048

Neighbor

gene id symbol gene type direction distance location
stk24a stk24 coding downstream 1538 18146406 ~ 18161642 (-)
LOC113525937 adam23,LOC108267022,LOC108424345 coding downstream 48775 18088623 ~ 18114405 (-)
LOC113526302 LOC108266276 coding downstream 78309 18082115 ~ 18084871 (-)
casp10 NA coding downstream 86858 18068228 ~ 18076322 (-)
prkra prkra coding downstream 100911 18054788 ~ 18062269 (-)
zmp:0000001200 dock9 coding upstream 948 18174996 ~ 18258225 (-)
LOC113526154 farp1 coding upstream 87187 18261235 ~ 18313731 (-)
LOC113526158 rap2a,LOC103043765,LOC100332969,LOC106582448,LOC103391592,LOC105907999,LOC101166017,LOC107549783 coding upstream 151359 18325407 ~ 18337210 (-)
mbnl2 mbnl2 coding upstream 167368 18341416 ~ 18370653 (-)
slc38a11 slc38a11 coding upstream 199129 18373177 ~ 18379363 (-)
G84883 LOC108266575,LOC108424342 non-coding downstream 26097 18135669 ~ 18137083 (-)
G84882 LOC108266575 non-coding downstream 27566 18134836 ~ 18135614 (-)
G84880 ino80d,LOC106582458 non-coding downstream 29491 18133402 ~ 18133689 (-)
G84881 NA non-coding downstream 31182 18131410 ~ 18131998 (-)
G84411 NA non-coding downstream 329591 17833375 ~ 17833589 (-)
G84975 xirp2 non-coding upstream 366305 18540353 ~ 18555865 (-)
G85069 NA non-coding upstream 493943 18667991 ~ 18668211 (-)
G85205 NA non-coding upstream 864179 19038227 ~ 19038432 (-)
G85211 NA non-coding upstream 877350 19051398 ~ 19053050 (-)
G85382 NA non-coding upstream 1094614 19268662 ~ 19268952 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 463200 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 782008 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 1123337 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1756702 16370227 ~ 16406478 (-)
G83554 NA other downstream 1942314 16219964 ~ 16220866 (-)
LOC113526313 baz2b other upstream 739339 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1269043 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 1394701 19568749 ~ 19586103 (-)
G85848 NA other upstream 2052680 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 2220423 20394471 ~ 20423244 (-)

Expression


Co-expression Network