casp10


Basic Information

Item Value
gene id casp10
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18068228 ~ 18076322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912592.2
gactcttttttatttaaagttgatttctttttatttaaaattgtcttctttttatttaaagttgactcttttttattttttcagttatttattgtTCCGCTGCCTTGACCTTCTGGGCCACCGTACACTACTCTCCTCCTTCTGAAGTCCTTCTAGTTTCATTTTTACTGGGGAAAGTTGCAGAGTCATGAGTGAGTCAGAATCAGTCATTTTTCTTCTGAATGTGGCGACAGTTGCGGGGTTTAAAGCCGCTTAAAACATGAAGACAGCCGAGACTCGTCCTcctgattagattagattagattagagctGAGCGGAGAGAGATCTTCCACCATGGAGGAGAAGGTGCTAGAGTTCCAGGAAATTCTGGTGCAGGTTCAGGACTCCTTGAGCCAGACTGAGGTGCTGGATCTCGTGTTCCTCTGCTCTGATATGCTCAGGAAGGATCTCAGCAGTGTGGTCACAGCCAGAGATCTGTTTTCTCTGCTGCAGAATCATGACCTGCTATCTTCTGAAGATAGGTCTCTGCTTGTTGAGCTGCTGAAGATCATCAAACGTGATAAACTTATTCGAGACCTGCAATTGAATCCACAACTCTCAGGAAGTCGTGTCTCCCCCTACAGGCAGATGCTATTTGATTTATCAGAGAACATCTCAGAAGATGAACTAAAGACTATTAAATTTGTGCTGGGCAAGACTTTACCCCGCAAGAAACTACAGCAAGATGTGACAATACTGCAGTTGTTTATGGAACTGGAGAAGGGAGGCTGCATGGGTGCTGATAACCTTGGCACTATAGAAAGAATCATTGGATTTGTATGCCctcatttaaagaaaacaatcagTTCGTATCAAATGGAGACCGGTGCTAGTGTTCATGAAGAAGTGAAATGGAGGGACAAGTCTGATTCTCAGGACGTCTCAGTAACCACCAGACCAATTCTGCCTGAGGACATTGTAGGGGCTACATACAACCAAGATTTGGTGTCTACTGAAGAGCTGCTGCCCCCCTCATATTTTAGTCAGCCACAGTCCACAGAGGTGCGTTCCTTGCAGACATCTTTCTCGGGTGATGCTGTAGAGGCACAGATTGCTCGCTTGAATCTTTCTGAAACTCAAAACCTCGCCCAAGGTGACAAGAACCTGAGCTTTCCTGAGCCTAACCAAAATAACACACCGAAGCTGGAGCAATATGACATGAGTGGAGATTGGAGAGGAATCGCCTTGATCATCAACAACTATGATTTTTCAAATTATCCACGGCTGAAGAACAGAGAGGGGACGGACGTAGATGAGAagAGTTTAGTTGCTGTGTTCAAGTGGCTGGGGTTTGAAACCATGACAAAGCAGGACTGCAGTAGGGAGGACATGCTGAGTGCTCTGAATGCGCTGTGCAAGCGAGATCACACTCAGGCCGACTGTgtggtgtgctgtgtgctgaCTCATGGCTATGAGAGGGGTCTGTATGGGGTGGATGGAGGGAAAGTCTCGCTAAGGGAGCTGATGGAGCTGCTGGATGGCCACCGTTGCCCCTCCCTCAACCGAAAGCCCAAACTCTTCTTCATCCAAGCCTGTCAGGGCTTGCAGGAGCAGCAGGTGGTCTTCCTTCAGTCGGATGGTTCTACAAACACCTCAGACATGgagatgggttttttttgtgatgctGAAGTGCCCAAAGAGTCCATACCTGCAGGGGCTGACTACCTAGTGGCGATGGCGACGGTGCCAGGCTATGTCTCATTCAGAGAGAAATTTAGAGGAACCTGGTTCATACAGTCATTGTGTAAGAACCTACAAAAGCTTGTGCCAAGTGGTATTGATCTGCTGTCCATCCTGACTGAAGTGAACAAAGAAGTTAGCAAGAAGGCTGACAAAACTGGAACCAGAAAGCAGATGCCACAGCCAGAATTCACACTGACTAAGAGAGTAGTGTTCCCAATACCAAAAACCCCTATGCCCTCTTAATCATCGTTTAACTGACATTTCATCTGGATTGCTACAAGGTCTTAACCTTGaggaactgtttttaaaattgccatatttttatgtgtatata

Function

NR:

description
PREDICTED: caspase-8-like

GO: NA

KEGG:

id description
K04400 CASP10; caspase 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912592.2 True 2056 mRNA 0.45 12 18068228 18076322

Neighbor

gene id symbol gene type direction distance location
prkra prkra coding downstream 5959 18054788 ~ 18062269 (-)
pde11a pde11a,LOC107671328,LOC107657382 coding downstream 76717 17937053 ~ 17991511 (-)
nfe2l2a nfe2l2,LOC107579917 coding downstream 171295 17881771 ~ 17896933 (-)
lnpa lnpk coding downstream 389067 17667566 ~ 17679161 (-)
atp5mc3a atp5g3,LOC108266717,LOC108424356,LOC103027531,LOC105908030 coding downstream 508155 17556819 ~ 17560073 (-)
LOC113526302 LOC108266276 coding upstream 5793 18082115 ~ 18084871 (-)
LOC113525937 adam23,LOC108267022,LOC108424345 coding upstream 12301 18088623 ~ 18114405 (-)
stk24a stk24 coding upstream 70084 18146406 ~ 18161642 (-)
slc15a1a slc15a1,LOC108239716,LOC101165016 coding upstream 86858 18163180 ~ 18174048 (-)
zmp:0000001200 dock9 coding upstream 98674 18174996 ~ 18258225 (-)
G84411 NA non-coding downstream 234639 17833375 ~ 17833589 (-)
LOC117597384 NA non-coding downstream 324203 17740637 ~ 17744025 (-)
G84394 NA non-coding downstream 340231 17726653 ~ 17727997 (-)
LOC117597450 NA non-coding downstream 636797 17407218 ~ 17431431 (-)
G84227 NA non-coding downstream 676281 17391684 ~ 17391947 (-)
G84881 NA non-coding upstream 55088 18131410 ~ 18131998 (-)
G84880 ino80d,LOC106582458 non-coding upstream 57080 18133402 ~ 18133689 (-)
G84882 LOC108266575 non-coding upstream 58514 18134836 ~ 18135614 (-)
G84883 LOC108266575,LOC108424342 non-coding upstream 59347 18135669 ~ 18137083 (-)
G84975 xirp2 non-coding upstream 464031 18540353 ~ 18555865 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 368248 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 687056 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 1028385 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1661750 16370227 ~ 16406478 (-)
G83554 NA other downstream 1847362 16219964 ~ 16220866 (-)
LOC113526313 baz2b other upstream 837065 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1366769 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 1492427 19568749 ~ 19586103 (-)
G85848 NA other upstream 2150406 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 2318149 20394471 ~ 20423244 (-)

Expression


Co-expression Network