arl5a (arl5a,LOC107555355)


Basic Information

Item Value
gene id arl5a
gene name arl5a,LOC107555355
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16353143 ~ 16362904 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912694.2
AGCTCCTCAGGCGCTATTAGCTGCTCTTCTCCACGTCGCTGTGCTCATTCAGCTGTGTTGCGGCGGAAGGCAGCAGCTGCAGCACCTCATCTACACCAAGCTGCGCGACCTCAATTACGCTTTTCTAACGATTATCTTCCTGAATCTGGCTATGACACTAGGCACATTATGCAGCATTTCAAAAGCAGCGGCGTTATCAATCGCTGTGTTTACTTCTCACCTCAATTTCGCCGCGAAAATATCCCCTGCATTTAGCTAAATCGCTGATTGTAACCGGGAGCTAGCTTGCTTCTGCTTTCGACTGGATTGCACAAGTGGCTTATACGAAGCAGCTGTATTTTAGACTATTTGTGTTGTCGGTGCGAAGAAAAGTCATCCAGTAGACATGGGAATCATTTTTACAAAGTTATGGAGGCTTTTTAACCACCAAGAGCATAAAGTCATCATTGTTGGACTGGACAATGCAGGAAAGACAACAATCCTTTATCAATTTTCTATGAATGAAGTAGTTCACACCTCACCCACGATAGGCAGCAATGTAGAGGAGATTGTGGTGAACAACACCCATTTCCTCATGTGGGATATAGGAGGCCAGGAATCTCTGCGTTCTTCATGGAATACCTACTACACTAACACAGAGTTTGTGATAGTTGTGGTGGacagcacagacagagagaggatcTCTGTGACCAGAGAAGAGCTCTACAGAATGCTAGCTCATGAGGACCTTAGAAAGGCTGGTTTGTTGGTGTTTGCCAACAAGCAGGATGTGAAAGGTTGTATGACAGTGGCTGAAATCTCACAGAGCCTACAGCTTACTTCTGTTAAGGACCACCAGTGGCACATCCAGGCCTGCTGTGCTCTCACAGGAGAGGGACTGTGTCAGGGACTGGAGTGGATGATGTCACGACTGCGAGTGAGATGACTTCTGACTGTAGCAAACGGTgcactctctttctcctccacGCGTGGAGGCCAACTGTCGCTCACTGTGAAGGTGGCCTGGAGATGTCACCTGGACTCGTgtgattaatttattacagCTTGTGGAGAACTGTGAACAGAAATCTTCAACTAACTATTCAAAAGGTTCAGGATGTGCAAAACCACATAAACTCAGTGTTTTTCTGCTCGGTTGCTCTCTAAAGAGTCTAACAGGAAAGATGCAGAGGCGCATGTGGACTGAGCGCATGTGTAACTGAGTGAGGCTCTGCATGGAGTGACTTTGCAGTATTGTCTGACTGCCTGACATAGTATTGCACAGTGTGTTCAGTCCAGTATTTACCTTGACCTTGAGCCTGTGTCTGAACCTCTCAGAGCCCAGGGCATCAAATAGAGACTAAAAATACCCTGCAAGGGAAGACTcactttatgtttaaaaaaaaaaaaaaaaaagtgaaataaagtgtttttaCCCATGAA

Function

symbol description
arl5a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Orthologous to human ARL5A (ADP ribosylation factor like GTPase 5A).

NR:

description
ADP-ribosylation factor-like protein 5A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07949 ARL5A; ADP-ribosylation factor-like protein 5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912694.2 True 1422 mRNA 0.46 6 16353143 16362904

Neighbor

gene id symbol gene type direction distance location
neb neb,LOC107725229,LOC107658288 coding downstream 3901 16293892 ~ 16349242 (-)
LOC113525961 LOC108424292,LOC108266955,LOC103034814,LOC105899367,LOC107705174,LOC106586357 coding downstream 253591 16098753 ~ 16099552 (-)
uchl3 uchl3,LOC107658267,LOC107668893,LOC107568837 coding downstream 268075 16079562 ~ 16085068 (-)
acod1 acod1 coding downstream 328799 16016189 ~ 16024344 (-)
zgc:152951 LOC108266837,LOC108424411,LOC103461279,LOC105936156,LOC103141471,LOC106938088,LOC106905368,LOC105893400 coding downstream 343319 15999677 ~ 16009824 (-)
kcnj3a kcnj3 coding upstream 67028 16429932 ~ 16457212 (-)
galnt13 galnt13 coding upstream 109155 16472059 ~ 16516287 (-)
fmnl2a fmnl2 coding upstream 199770 16562674 ~ 16614183 (-)
mylka LOC108266375,LOC108424386,LOC107559533 coding upstream 254667 16617571 ~ 16675267 (-)
tlk1a tlk1 coding upstream 639214 17002118 ~ 17025530 (-)
LOC117597324 NA non-coding downstream 124706 16224341 ~ 16228437 (-)
G83474 NA non-coding downstream 280072 16072840 ~ 16073071 (-)
G83473 NA non-coding downstream 280459 16072397 ~ 16072684 (-)
G83457 NA non-coding downstream 322400 16030534 ~ 16030743 (-)
G83456 NA non-coding downstream 326954 16025382 ~ 16026189 (-)
G83614 NA non-coding upstream 46524 16409428 ~ 16409893 (-)
G83953 NA non-coding upstream 602607 16965511 ~ 16966173 (-)
G84061 NA non-coding upstream 764406 17127310 ~ 17128680 (-)
G84177 NA non-coding upstream 944665 17307569 ~ 17311955 (-)
G84182 NA non-coding upstream 961141 17324045 ~ 17324878 (-)
G83554 NA other downstream 132277 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 276523 16043283 ~ 16076620 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 379229 15943740 ~ 15973914 (-)
LOC117597380 NA other downstream 1238448 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 1275927 15049883 ~ 15077216 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 7323 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 665333 17028237 ~ 17039843 (-)
sp3a sp3 other upstream 1009075 17371979 ~ 17381172 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 1332386 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 2550483 18913387 ~ 18968492 (-)

Expression


Co-expression Network