commd6 (commd6)


Basic Information

Item Value
gene id commd6
gene name commd6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 10491930 ~ 10495773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912739.2
AACGAGGACGCAAATGACGTATGCGGAAGTAACTCGTTTTCTGTCAGCGTAGAGAGGAAgacctttaaaaacaaatgaaaatttgtttttgttttgttttaaaaaatattattccttaaacaaacaaaatgccgTTTCCTTTTTAGAAACTTTAAGACTTTTATGAGTTGCAGTCTTGTTTTATAAGTTGCGCTTTGTTGAATGCAGTCTTTTTGTAGCTAGTTTTCTAccgtcttcaggatggagacaTCATCTGATGTGGCTGTAGTTGAGAACATTGGGAAATTGCCATCCGAAGTGTTTGAAGAAACATGTCATGAGATTCTGCTTCATCTTGAAGGAAAGCGCAGTGCAGTAGATTTGGTTGAAAACTACCAGAAATTTCAAAGAGCTGGTATAAACCTTGACTGGAAAGCTGTTCAGGATATTATTAGACTGTTGTCATTTAATTTTAGATCAGCTGCGAAGACTAACCTCACTGCTGATGGTCTGGTCACTAAATTAGGAGAGTGTACTTCTAAATGGTCCAAATCATCTTTACAAGTCATGCACCAGCTGTGGACTGAACATGGCTCTCTTGTAAAAGCACACCAGGAGGTTCAGGCTGTGGCCAGCATTGGACAGCTGGTAGATATCCAGTGGAAGCTGGGGATAGCTGTGAGCTCGGACACATGTCGCTCGTTCAACTCCCCATACATCTCCGTCCTGATGAAAATTGCAGACACATCTGGAGAGATTTCCTACAAGTCCTTTGAAATGACAGTTCTTCAGTTCCAGaacTTCTACAGACAGTTCAAAGAAATTGCTTCTGTTTTGGAAACTGTGTAAGAGTTCAGCTCTAAATGTTCACCATTCCTATTCCGGTCTGTAGCCTTTCAGTATTTACTGACTGTTTACATTTCAACTCTTTTGGTATGTATGCTTGCTGTTCGACTAACCCATAGTGGGATACTTAACTATGCTGTATTTGCTctgacatttatttcattttgaatgTGCTTTCCAAAATAATTTGTTATAACCACTGAATAAAGTTTGAATAAAGATCTTTGCTTGCA

Function

symbol description
commd6 Predicted to enable NF-kappaB binding activity. Predicted to be involved in negative regulation of NF-kappaB transcription factor activity. Orthologous to human COMMD6 (COMM domain containing 6).

NR:

description
COMM domain-containing protein 6 isoform X1

GO: NA

KEGG:

id description
K22562 COMMD6; COMM domain containing 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912739.2 True 1058 mRNA 0.39 7 10491930 10495773

Neighbor

gene id symbol gene type direction distance location
tbc1d4 tbc1d4 coding downstream 8061 10452997 ~ 10483869 (-)
klf12b klf12,LOC107681319,LOC107720110,LOC107668887,LOC107740907,LOC107600382 coding downstream 66767 10387369 ~ 10425163 (-)
dachd dach1,LOC108266692,LOC108426032 coding downstream 153430 10230762 ~ 10338500 (-)
clybl clybl,LOC107681316,LOC107748615,LOC107600379 coding downstream 327633 10097231 ~ 10164297 (-)
si:ch211-168k14.2 si:ch211-168k14.2,LOC108266656,LOC108441415,LOC107681321,LOC107748618,LOC107600399,LOC105905900 coding downstream 417092 9912923 ~ 10074838 (-)
lamp1b LOC108266564 coding upstream 6182 10501955 ~ 10505784 (-)
pou2f1b LOC108266565,LOC108426038 coding upstream 21434 10517207 ~ 10538871 (-)
LOC113523755 nxpe3 coding upstream 139592 10635365 ~ 10646195 (-)
LOC113546580 NA coding upstream 179610 10675383 ~ 10689789 (-)
LOC113526085 nxpe3 coding upstream 198088 10693861 ~ 10717168 (-)
G79903 NA non-coding downstream 714541 9775806 ~ 9777389 (-)
G79933 NA non-coding downstream 718653 9772634 ~ 9773277 (-)
LOC113525888 NA non-coding downstream 725354 9764485 ~ 9766576 (-)
G79923 NA non-coding downstream 733761 9757930 ~ 9758169 (-)
G79920 NA non-coding downstream 735965 9755741 ~ 9755965 (-)
LOC117597353 NA non-coding upstream 125764 10621537 ~ 10622344 (-)
LOC113526087 NA non-coding upstream 223361 10719134 ~ 10721674 (-)
G80463 LOC108266368 non-coding upstream 276615 10772388 ~ 10775221 (-)
G80464 NA non-coding upstream 280269 10776042 ~ 10776341 (-)
G80526 NA non-coding upstream 413400 10909173 ~ 10931379 (-)
si:dkey-83m22.7 NA other downstream 837475 9632685 ~ 9654455 (-)
G79826 NA other downstream 922810 9568555 ~ 9569120 (-)
LOC113525856 mob4,hspe1,LOC108266284,LOC106582314,LOC106586370,LOC105016277,LOC101078365,LOC101472107,LOC104932517,LOC103156730,LOC106530744,LOC100701317,LOC102310674,LOC103391647,LOC108238849,LOC107690609,LOC107731766 other downstream 960259 9520729 ~ 9531671 (-)
cnga4 cnga4 other downstream 1343283 9099536 ~ 9148647 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other downstream 1472482 8996783 ~ 9019448 (-)
LOC113526229 nxpe3 other upstream 99667 10595440 ~ 10614287 (-)
G80600 NA other upstream 473644 10969417 ~ 10971157 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other upstream 522506 11018279 ~ 11035561 (-)
LOC113546407 NA other upstream 802095 11297868 ~ 11302844 (-)
mphosph8 mphosph8,LOC107658258 other upstream 954439 11450212 ~ 11460325 (-)

Expression


Co-expression Network