vgll3 (vgll3)


Basic Information

Item Value
gene id vgll3
gene name vgll3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15945570 ~ 15948341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912773.2
TGCGATTCTCTATTTTGATCTCCGAGCTGTAGGTGGTGAATCCTCGACTGGAAACACTTTTTGTATGCaaatttttccttttccacaCTGCAGCGCTTTTGTTGACGCTCAGGTTTATAAAGAGAGCAGTGATGACACCAGCAGTTATTCGTCATTAAGGAGCCAGCCACGGCCGCTTTTCTGAAAACCTCTCGAGATTACTGACAGCCTTCTGCCATGAGCTGCCTGGATGTTATGTATCAGAATTATGGAGCTCATCATTACATGCCAGCgacggcagcagcagcagcctatAAAGCGGCATACTATCATcatcaccagcagcagcagAAAAAGTTCAGTGCATACAGCAGGATGCAGGACTTTGCGGACTTGCCTGCACACTGTGTCCAGAGTAAACAGGCTGAGAAGCCCAGACCTGAGACTGAATTGCAAAGAGATGATGACGAGCAGCatggtgaggaggaggaggtgaggtCTAAGGATTCACAACCAGCTGAGACAGAGTACCTGAGCTCCAGGTGTGTGCTCTTCACATATTTCCGTGGGGACATTGGCGATGTGGTGGATGAGCACTTCTCCCGTGCCCTCAGCCAACCTAGTGCCTTCAGTAATGACACCAAGAGCATTAGGCTCCCATCTGGAGGACTATGGAAAGATGGCAGTTCTCTCTGCGAGAGTCAGAGCGGCTCTTTGCCGTCTTCGTTATGGAACAGTAGTTATCCATCTCAGACCAACGCCTGCATCCCCTCCGTTCACAGTGATTTCCCTGCAGCTGCTGCCTTCCACACAGCAGACACTGGCATTTGGAGTGGCCATAGCCTGACCCAGCCTGGCCTGCCCCCTCATTCAGCCCTCACTGACTCATGGCCCTATGGCCTGGTTGGCCAAAGCAGCGCCGGACACCATCATGTCCATGACATGTACCCTCATATGCACCCACGCCACCATCATCCCCACCCTCATGCCCATCCCATGCTCCATCACAGCCACAGCAGTGCACTGGACCATCGCTTCAGTGCCCTTCTGTTGCCTGGGATGAGGGCATCGAGTAGCCCTTCTTCTAATACAGAGGGAATCAAGACAGAGCTGGAGCCTGCTGCCTCTAGCTGGCCAGCATCCTTCCATGGCTCTGTAGATATCTATGACACAGCACAGGAACAGGACAAAGCAAAAGCCAGTGTCTGGTTCTGAAACCGAGAAAGCCAGCCAGTGACACACAGCCTTGGAGTAGAGCAGCGCTGACATGAGCAATGTGAGATGGGCCAGAGTCTCACTGTGGAATCTCTCCCTGGAAAGCTTTCAGATTTCCTGGGAGTCGACTCAGGAAAGGAAACTTTGACTCCCTCCATTAGACAAGCCTAACAATAAACTTGGAGAAAAGCAACTTTCTGTAAAAGCAAACAATCCTGTCCGAGTTTGTGTATGATGAGAAGAGCGAGGCGTTAATGAATTCGGCCAGAGTGCTGTCCCACCTGGCTCTCACAGAGGGAATGCAATGACGGAAGCCACTTAAATGTATCCAAGTCTAAGAGGTATATTTTTCCTACTTTTTGTAAACCACGTTGAACATTTCCTGTTTGGTGGTTTGTGATCAGGAACAGAAGCATAAGCACATACCACTGGTTTTGTTGAAAGAACTGCCTGTCTCGTTTCAAATGAAGGCCAGTTTTGTGTTAATGTGGCtataaatatgtgaatgttTGAGTAGCAGCCTTGTTCAAATAGAAGTTttactttaatatattttgtctATGGTCTTGTGATCTACAGATTTGACAGTTCTGTAAGAAATTTGTGCAAATTGTTTCTACCAAAGTGTTACCTGTTTTGTTgcattattttgacttttgaATAAGAATGTAAGTGTTTTCGAtgctaaatactaaataaattgCTAAGTTCTATTGGCAAA

Function

symbol description
vgll3 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human VGLL3 (vestigial like family member 3).

NR:

description
PREDICTED: transcription cofactor vestigial-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912773.2 True 1915 mRNA 0.48 4 15945570 15948341

Neighbor

gene id symbol gene type direction distance location
kctd4 kctd4,LOC107688678,LOC107713709,LOC107748885 coding downstream 37139 15906927 ~ 15908431 (-)
tsc22d1 tsc22d1,LOC107713726,LOC107551985,LOC107688650,LOC108266727 coding downstream 52598 15864043 ~ 15892972 (-)
enox1 enox1,LOC107661308,LOC107713727 coding downstream 115552 15779527 ~ 15830018 (-)
epsti1 epsti1 coding downstream 184266 15744507 ~ 15761304 (-)
vwa8 vwa8 coding downstream 318949 15560485 ~ 15626621 (-)
zgc:152951 LOC108266837,LOC108424411,LOC103461279,LOC105936156,LOC103141471,LOC106938088,LOC106905368,LOC105893400 coding upstream 51336 15999677 ~ 16009824 (-)
acod1 acod1 coding upstream 67848 16016189 ~ 16024344 (-)
uchl3 uchl3,LOC107658267,LOC107668893,LOC107568837 coding upstream 131221 16079562 ~ 16085068 (-)
LOC113525961 LOC108424292,LOC108266955,LOC103034814,LOC105899367,LOC107705174,LOC106586357 coding upstream 150412 16098753 ~ 16099552 (-)
neb neb,LOC107725229,LOC107658288 coding upstream 345551 16293892 ~ 16349242 (-)
G83309 NA non-coding downstream 5514 15939499 ~ 15940056 (-)
LOC113526197 NA non-coding downstream 22361 15920825 ~ 15923209 (-)
G83270 NA non-coding downstream 58195 15830129 ~ 15887375 (-)
G83285 NA non-coding downstream 66455 15877620 ~ 15879115 (-)
LOC117597420 NA non-coding downstream 87521 15854060 ~ 15858049 (-)
G83446 NA non-coding upstream 61615 16009956 ~ 16012207 (-)
G83456 NA non-coding upstream 77041 16025382 ~ 16026189 (-)
G83457 NA non-coding upstream 82193 16030534 ~ 16030743 (-)
G83473 NA non-coding upstream 124056 16072397 ~ 16072684 (-)
G83474 NA non-coding upstream 124499 16072840 ~ 16073071 (-)
LOC117597380 NA other downstream 830875 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 868354 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 1108161 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 1392075 14538868 ~ 14553495 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 2090384 13762417 ~ 13855186 (-)
lmo7a lmo7 other upstream 94942 16043283 ~ 16076620 (-)
G83554 NA other upstream 271623 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 421886 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 1079896 17028237 ~ 17039843 (-)
sp3a sp3 other upstream 1423638 17371979 ~ 17381172 (-)

Expression


Co-expression Network