rsph1 (rsph1)


Basic Information

Item Value
gene id rsph1
gene name rsph1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15426854 ~ 15430622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912868.2
TTGTCATGGTAACGGCAGGCGCAACGGATCGTCGCTCTGTGCAGGTGGCTAGTTTGGTAGCGGATATCAGCGTGTTAACGGAGAATAAACATGTCGGACGCTGGATCTGAGGAATTTGAAGATGAGCAAACATTTCATGGAgagtaTGAAGGTGAGCGGAATGAAGCAGGAGAGAGGCATGGTGCAGGGAGAGCAATGCTGCCTAATGGAGACATCTACCAGGGAATGTATGAGCGAGGCAGCAGATGTGGACAGGGAACCTACAGATTTAAGAATGGGGCTCGATACATAGGGGAGTATTACATGAACCTGAAACATGGACAAGGCGTTTTCTATTACCCTGATGGTTCCAAGTACGATGGCTCATGGGTGGAAGACCAGCGTCAGGGTCACGGGATTTACACATACCCTAATGGAGACAGCTATGATGGGGATTGGCTGCATCATCAAAGaCATGGGCAAGGTGTGTACACATACCATGAAACGGGTTCTAAGTATGCTGGCATGTGGGTTAATGGTAAGATGGAGTCAGTGGGAGAGTTAATCTATCTAAACCACAAATACCAGGGCAACTTTCACAACAATAATCCCTCAGGTGCAGGGAAGTATGTGTTTGACGTTGGATGTGAGCAGCATGGGGAGTATCTGCGGGTAGATCAGGATAAAGGAGACGCAGAAGAGGAGGAACTTGTCACTACCACTGTTCTAAAATGGAAACCCAAAGCTTTGATGTGCTTATCATCTCACATCTCTGATCCACCATGTCTAAAGGATAATGCCTCTTCGGGCCAGGGCATGTCTGAGGAGGGAAAGGCTCAGACACCCCTGGAAGAGCAGAACATGGGGCAGAGCCCTGCACCAGAGACCAGTTAATTATGGCAAATGGTATacggagtgtgttattccacttataacACAGTGATTTTGCCAATGATCacaacatttcatttattaatgaaagacacCTCTCATTTTTTAACCATATAAAGTTAGTTTTAACTTTCCAGGAGTTagtaagttagttcctgttagcacttatCTTATAATAACACTAAGAAGCTGTTCCATCACCAgtatctcctctctctctctctctctctctctctctctctttctttcgcTCAGAAggcacagcttgtcatttttacTGAGAatccagaaagcacaaactctgTCCTCAAGACTGTCCTCTCCTGGGAAACTTTGTGACTGTGACTGTTATAAAACTCtgacttccataaatgttaaataaatgtctcctaacaaaaaaaccttcaccaca
>XM_026912869.2
TTGTCATGGTAACGGCAGGCGCAACGGATCGTCGCTCTGTGCAGGTGGCTAGTTTGGTAGCGGATATCAGCGTGTTAACGGAGAATAAACATGTCGGACGCTGGATCTGAGGAATTTGAAGATGAGCAAACATTTCATGGAgagtaTGAAGGTGAGCGGAATGAAGCAGGAGAGAGGCATGGTGCAGGGAGAGCAATGCTGCCTAATGGAGACATCTACCAGGGAATGTATGAGCGAGGCAGCAGATGTGGACAGGGAACCTACAGATTTAAGAATGGGGCTCGATACATAGGGGAGTATTACATGAACCTGAAACATGGACAAGGCGTTTTCTATTACCCTGATGGTTCCAAGTACGATGGCTCATGGGTGGAAGACCAGCGTCAGGGTCACGGGATTTACACATACCCTAATGGAGACAGCTATGATGGGGATTGGCTGCATCATCAAAGaCATGGGCAAGGTGTGTACACATACCATGAAACGGGTTCTAAGTATGCTGGCATGTGGGTTAATGGTAAGATGGAGTCAGTGGGAGAGTTAATCTATCTAAACCACAAATACCAGGGCAACTTTCACAACAATAATCCCTCAGGTGCAGGGAAGTATGTGTTTGACGTTGGATGTGAGCAGCATGGGGAGTATCTGCGGGTAGATCAGGATAAAGGAGACGCAGAAGAGGAGGAACTTGTCACTACCACTGTTCTAAAATGGAAACCCAAAGCTTTGATGTGCTTATCATCTCACATCTCTGATCCACCATGTCTAAAGGATAATGCCTCTTCGGGCCAGGGCATGTCTGAGGAGGGAAAGGCTCAGACACCCCTGGAAGAGCAGAACATGGGGCAGAGCCCTGCACCAGAGACCAGTTAATTATGGCAAATGAAggcacagcttgtcatttttacTGAGAatccagaaagcacaaactctgTCCTCAAGACTGTCCTCTCCTGGGAAACTTTGTGACTGTGACTGTTATAAAACTCtgacttccataaatgttaaataaatgtctcctaacaaaaaaaccttcaccaca

Function

symbol description
rsph1 Is expressed in Kupffer's vesicle; forerunner cell group; neural tube; pronephric duct; and spinal cord. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 24. Orthologous to human RSPH1 (radial spoke head component 1).

NR:

description
radial spoke head 1 homolog isoform X2

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007283 spermatogenesis biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19755 RSPH1; radial spoke head protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912868.2 True 1282 mRNA 0.45 8 15426854 15430622
XM_026912869.2 False 1042 mRNA 0.47 9 15426854 15430622

Neighbor

gene id symbol gene type direction distance location
stx19 stx19 coding downstream 2805 15418742 ~ 15424049 (-)
myo1b myo1b,LOC107664008 coding downstream 213990 15155587 ~ 15212864 (-)
slc35a5 slc35a5 coding downstream 405506 15013261 ~ 15021348 (-)
dipk2b c6hxorf36 coding downstream 522119 14900159 ~ 14904735 (-)
fundc1 fundc1,LOC107673665 coding downstream 569334 14853744 ~ 14857520 (-)
fbxl3a fbxl3,fbxl3a,LOC107664003,LOC107670904,LOC107549764 coding upstream 5343 15435965 ~ 15441651 (-)
mycbp2 mycbp2,LOC107549765 coding upstream 11762 15442384 ~ 15505351 (-)
vwa8 vwa8 coding upstream 129863 15560485 ~ 15626621 (-)
epsti1 epsti1 coding upstream 313885 15744507 ~ 15761304 (-)
enox1 enox1,LOC107661308,LOC107713727 coding upstream 348905 15779527 ~ 15830018 (-)
G82961 NA non-coding downstream 52352 15371262 ~ 15374502 (-)
G82943 NA non-coding downstream 214535 15209315 ~ 15212319 (-)
G82904 NA non-coding downstream 301206 15085363 ~ 15125648 (-)
G82864 ccdc80,LOC101480086 non-coding downstream 422095 15002534 ~ 15004759 (-)
G82861 NA non-coding downstream 435368 14991216 ~ 14991486 (-)
G83171 NA non-coding upstream 56461 15487083 ~ 15487834 (-)
G83173 NA non-coding upstream 117659 15548281 ~ 15600586 (-)
G83216 NA non-coding upstream 248828 15679450 ~ 15714440 (-)
G83270 NA non-coding upstream 399507 15830129 ~ 15887375 (-)
LOC117597420 NA non-coding upstream 423438 15854060 ~ 15858049 (-)
LOC117597380 NA other downstream 312159 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 349638 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 589445 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 873359 14538868 ~ 14553495 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 1571668 13762417 ~ 13855186 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 513118 15943740 ~ 15973914 (-)
lmo7a lmo7 other upstream 612661 16043283 ~ 16076620 (-)
G83554 NA other upstream 789342 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 939605 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 1597615 17028237 ~ 17039843 (-)

Expression


Co-expression Network