ifih1 (ifih1)


Basic Information

Item Value
gene id ifih1
gene name ifih1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19161216 ~ 19182903 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912918.2
CTGCTGAGAACATTTTAGAGTAGCACAAATGCCAGGACTCCGTTTAAAACCGAAAGCTTTGACTGAGCTCTGTTTGTAAGAAACCTAGCAGGAGGGGAAACGAAACCGAAAGCAGGCGGCACATTTCCCGGGAGTTCATGTTTTCTGCaccctgtctgtgtgtttcactgCGTTTCACTTTGTATACACACATTGTCCCGAGCTCACATCTTTATTCTGAACCATGGACCACGATCAGGAGAAGAAAACCATCGACTGCTTCAGAAACCGACTGAAACAGCTGATTCGGGTCGCCCCTGTTCTGGATGTGCTACACTTCCTAAGCGATGAGCAAAAGGAGCTGATAAAAGCCAAACTACAGAATGAAGGCGAAAAAAAGGCTGCCGACCTTCTCCTCCAGGAAATTATAAGTAAAACCTATCCAGAAGGCTGGTTCAGAGAACTCATAACTGCACTTGAAATGGTCGGATGTAAACAAGCAGCCAACTATATGGAAAACAATCCTCCCAGTCCGTCCTTAGAGGCTGAGAATGACACCTACATCCGGCTGATAGACCTGCTGAAGCTCTCTCTAATCAACATAAAGACTCGGGATGTGTGTCACAGCTGTTATGAGAGGAATATTCTTACCGCCGAGGATCGCGAGACTATTTTAGCAGTGACAGAACAACATGGGAACATGGCCGGAGCTCGTGCACTTTTGTCTCAGCTGCCAAAGAATGAGTTTGGCTGGTTCTCACAGTTCCTGGATGCTTTGGAGAAGACAGAACACATCAGGCTGGTGCAGGAATTACGAGGAGAACCTGACGAGCCCAGTGAATCATCAGCTGATGCTGACAAACCACAGTCTCTAAAGGATGAGAGTGAATTGGCTACACAGACTGACACAAAGATGGGGGACGAGGTTTTGGATAACCCTGCCCCcagatctctctctccccctcccagTTTGGCCTCTGGCTCCTCAGCTGAAGCTGCAGCTCTTGACAGAAGTATGGACAGCAGTAGCTTCCTTTCCTGTATGGACTCATCTGCTGAGCTTAGCATTGGAGGCACAGATTTGGACCTTTATGAAGGCAGTGATGAAGAAACAACAGAGAGCTCGGATCAATCAGTGAATGAGAAAGAGATTGTGCTGCGTGATTATCAGACGGATGTCGCTCGTCCAGCTCTGGAGGGAAAGAACATCATCATCTGTCTCCCGACAGGAAGTGGTAAAACCCGAGTTGCAGTGTACATCACCAAACAGCATCTGGAGAGCAGAAAGCTAAAGGGACAGCCAGCAAAAGTTGTTGTTCTGGTTAACAAGGTGCCCCTGGTGGAGCAGCACTACAAAGCAGAGTTTGGGAAGTTTCTGAAGCACCAGTACTCTGTAGAGAGAGTGAGCGGAGACTCACAGCTTAAAATCTCCTTCCCACAAGTCGTTGAGAAGAATGATATCATCATCTGCACTGCGCAAATCCTGGAAAACTCTTTAGCCAAAGCCAAACAGGGTGATGAGGACGGGATCACATTATCACAATTCACTTTGATGGTAATTGATGAGTGCCATCATACACAAAAGGGAGGTGTGTATAACCACATCATGATCCGCTACCTGAAACAGAAGCACAGGAATGCTAGGCTGCGAAAGGAACAGAAACAACCAGCGCCGCTGCCACAGATCCTCGGCCTCACTGCTTCACCCGGAGTTGGAGGAGCCAAGACTCAGCAGAAAGCTGAAGAGCACATTCTCAGaATTTGTGCTAACTTGGACGCCTACACAATAAAGACCAAAGCTCACGGAGAAGAGCCCAAGGGTCCATACAAACGTATTGCGAGTGCTCAGGAAAGAAAGGAGGATCCCTTTGGAGATGTGATCAAAGGAATCATGAATGAGATTCACACACATGCCCAACTGAACCCACTGTGCCAACCAGGCACACAAAATTATGAGCAGTGGGTGGTGCAAAAAGAGCAGAATGCTGCTAAAGAAGACAATCAGACAGTGCGGGTTTGTGCAGAGCATCTGCGTCAGTACAACGAGGCTCTCTACCAGAGCAACACCATCCGCATGTGTGATGCCTTCAGCTTCCTCGACAAGTACTACAATGAAGAGATCAAGAAGAAATTTTCCCCTGACGATGAGGACACAATTCAGATCACTGACACTGAACGATTTCTCTTCAAATTATTTAATGCTAAAAAAGAGCGTCTTCAGGAGCTGATGAAAAACCCGCAGTATGAGAATAACAGTCTGGCTCAGCTGAGGGCGCTCATCTTGGAGGAGTACACCACCAGAACTGAAGCCAGAGGCATAATCTTCACCAAGACTCGCCTCAGTGCCATTGCTCTCAGCCAGTGGATTCAGGAGAACTCAAAGTTTGAGGATGTTGGCGTCAGAGCAAGCCACCTGATTGGTGGTGGAGATCAGAGTGTGGTGAAACCAATGACTGCAGCAGAGCAGAGGGAGGTGCTGAACAAGTTTCGTGAAGGAGTGATCAATCTGCTGATAGCCACTACTGTGGCAGAGGAGGGCCTTGATATTAAGGagtgtaattttgtttttcGGTACTGTTTGGTGACCAATGAAATCGCTATGATTCAGGCTCGAGGCAGAGGAAGAGCAGAGGACAGCAGTTACACAGTGGTGGAGGAGGCAGGATCGGGTGTAGCAGAACGGGAAAGTGTGAATGAATACAGGGAAAAAATGATGAGCAAAGCTATCGCCAGGGTGTGCACACTGAGCCGTGACGAGTATGAAAAGAAAATAAATGAGAACCAGCTGCAGGCAATTGTGGAGGAGCGTgtgaagacgaagaagaaggaTAAAAAGGGCATGATGAAGGAAGACCCCAGCAAAGTGAAGCTATCCTGCAGGAGCTGTGGTGTATCTGTGTGCTCTGGAGAAGATATTGAGATCATTGAGAGGATGCACCATATCAATGTGACTGCAGCATTCAGAGAGCTGTTCACTGTCAGAGAGAACACTGCCCTTCAGGAGAGACTACTGGATTATGAGGCAAACGGAGTTATAGCATGTAAAAACTGTGGCCAGCGTTGGGGCTCTATGATGCTTTATAAAAGCATTGAATGTCCATGCCTCCACATCAAAAACTTTGTGGTGGCATACAACTCAAAGAAAAAGGTGTTCAGCAAGTGGAATGAGCTGGCCATCAGGTTCCCTGCGTTTGACTACGCTCACCATGTCGTCACACACAACTCAGACGATGAAACAGAGATGGACTAAATCAGtgtaaaaagcaaaacagtGCTCATCTCAGTTTACTTACTGACAACTAGTACTGAACACCATACTGTGCATTGTGCCATTGAATGAATGATGCATGAAGCTGtcacaaaaatataaagatatattgCTATTGCCGCATTCACGccatgaaaaaaatcaacagaccATACAATCATTTACACTGGCATGTGGAATGTGAATACTGtctcttttatttccttttatgaAAAATCTTTTTAACTCTGGATGATTTTCAGGATAAGAAATATCTTAAAACATACTGATAGACAGTATCATCATCTCTTTTAgttgctgtaaaatgttttacattttaatgatgaTCAATTTAATCACCACATTTTTATGGCTGCTCTGACTGCTTCCATGAGagtggtgacttttttttttggactaatGCCATTCAATGCAGTTCCactaaaacctctaaaaaatATCTAAAGATTTCTGTCACttctgttttcttaaaaaatacaAGTTCCTTAATCATGTGGAATATTTTTTCCTGTGATACTTAAATGAATGAGATATTTATCACTATAAGCTCCAAATGAATTGAACACCTTTAACACCTTTACACTGTAAAATCAGGTCATTTATGCCTTCAGCAGGTGAAGCCAAGAGGAGCAAGCCTTCATGACTAGTCCAtgcatgttttgttgttttgcagaTTTGGTACAGCACATTGGATTTGATATTTAAGGGTCATTCCATCTAAACTGTGTGAAGCCTATAGTTGTTTTACCCCTAAATTGTATATCACATATACAGTGTGCTAGATTTCCAGTAAAAATGTCAATTTCCATTGACTTACACAATGCAGTGTACTTCTTTAGGGAAGGATACGGTTTATTCccactaaacaaataaatgtctgATGTGTCA

Function

symbol description
ifih1 Enables protein heterodimerization activity. Acts upstream of or within regulation of transcription, DNA-templated. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human IFIH1 (interferon induced with helicase C domain 1).

NR:

description
melanoma differentiation associated gene 5

GO: NA

KEGG:

id description
K12647 IFIH1, MDA5; interferon-induced helicase C domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912918.2 True 4135 mRNA 0.45 16 19161216 19182903

Neighbor

gene id symbol gene type direction distance location
fap LOC108267048,LOC108424318 coding downstream 593 19147115 ~ 19160623 (-)
gcgb gcg,gcgb,LOC107730589,LOC107677918,LOC107722905,LOC107674768 coding downstream 15811 19144192 ~ 19145405 (-)
LOC113525848 rbms1,LOC108266580,LOC105908026,LOC107730583 coding downstream 116560 18992048 ~ 19044656 (-)
cd302 cd302 coding downstream 176523 18978187 ~ 18984693 (-)
spc25 spc25 coding downstream 404996 18751914 ~ 18756220 (-)
LOC113526240 kcnh7 coding upstream 1918 19184821 ~ 19249207 (-)
fign fign,LOC107722902 coding upstream 147790 19330693 ~ 19372088 (-)
cobll1b cobll1 coding upstream 313903 19496806 ~ 19536404 (-)
tmem37 tmem37 coding upstream 382363 19565266 ~ 19568061 (-)
insig2 insig2,LOC107549777,LOC107689500,LOC107670326,LOC107752584,LOC107720943 coding upstream 493012 19675915 ~ 19681540 (-)
G85211 NA non-coding downstream 108166 19051398 ~ 19053050 (-)
G85205 NA non-coding downstream 122784 19038227 ~ 19038432 (-)
G85069 NA non-coding downstream 493005 18667991 ~ 18668211 (-)
G84975 xirp2 non-coding downstream 605351 18540353 ~ 18555865 (-)
G84883 LOC108266575,LOC108424342 non-coding downstream 1024133 18135669 ~ 18137083 (-)
G85382 NA non-coding upstream 85759 19268662 ~ 19268952 (-)
G85459 NA non-coding upstream 281249 19464152 ~ 19478394 (-)
G85460 NA non-coding upstream 281872 19464775 ~ 19467176 (-)
G85461 NA non-coding upstream 290103 19473006 ~ 19473321 (-)
G85493 NA non-coding upstream 360708 19543611 ~ 19543850 (-)
LOC113526313 baz2b other downstream 192724 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 1461236 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 1780044 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 2121373 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 2754738 16370227 ~ 16406478 (-)
grb14 grb14 other upstream 260188 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 385846 19568749 ~ 19586103 (-)
G85848 NA other upstream 1043825 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 1211568 20394471 ~ 20423244 (-)
phgdh phgdh other upstream 1953143 21136046 ~ 21144621 (-)

Expression


Co-expression Network