stx19 (stx19)


Basic Information

Item Value
gene id stx19
gene name stx19
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15418742 ~ 15424049 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913001.2
GATAGTGTCTTCTCTCTATGGGCTCATGATGCAGCGTCATTCAACCCTCCTGGGACTAAAACATAAGAGAACACCAACACCACCTATTATCTCCAAAGTCTTCCTCTCTGAGCTTTAGTCATGAAGGATCGCTTAGAAGAGCTGCGTCTGCAGATCAAAGCAAATCAGCAACTTCAAGAAGGTAATTCCTTCACCCAAGATGAGGATGAAGAGCCAATGTCCTTCATTGGCCGCTGGCCACAAGCTGAGACTGAGCCTGTGCTGGAGAACTTCCTGGATGAGGCCAAACGTGTCCGTGACAGCCTTGAAGAGCTGGAGGCTGAGGTTAAGAAGTTCAGTCAGCAGCAGAGAAACCTCGTGGCCACCATGCGGCGTCTCAGCGTCATGAAAAAAGAGAGCAGCCTCACTCGGGACATCAAGCTGCAGGCTGAGAGCTTGCGTAAGAAGCTTGATGCCCTCTCAAAGCAGGCGAAGCTCACTGAGACTGAACTGGGAGCGTCAGCTGCCACAGCCCGGATCCAACGTGCCCAGCATGATGCGCTCTTCCGTCGGTTCCAGGAGGTCATGCGTCAGTACAATGACTCACTCCTGAGCAAGCAAGACAAATGCAAGCAGTTCATCATCAGGCAGCTGGAGATCTCTGGCCGAGAGGTTTCAGAGGAAGAAGTGGAAAACATGGTGGAGCAGGGTAAGTGGGATGTTTTCAACGAGAACATCCTGGTGGATGTCAAGATCACTCGCACACAGTTATCTGAGATAGAGCAGCGCCATAAAGAACTGCTCACCCTTGAGAGCAACATGAAGGACCTGAGAGAACTCTTTCTAGATGTGTTCATGCTTGTGGAAGAGCAAGGAGTGCAAATTGACAATATCCAGGCCAATGTTGAAAAGACTGTGGACTATGTGATGGTTTGTAATGagaaattcaaaatggcttccaGATATAGGAAGAAGAACCCTTTAAGAAGActgtgttgctgctgctgcccATGGGCATAAAGCAGGACATACTGTATTGTATGAAGGGCTTAGGTtgtgaaaacagagagagaactTGTGGAATGTATAAAAGCATGGACAATGTCTGTGATAAAAGCAAAACCCTAGCTCAATTTATGACATTTCTGTAGAGTCAAGACACCAGACTTGTGATATGTAGCTACTAATGACCCAAAGGCTCATGTTTAATTATAGTTATGtagaaaacaatttatttatgtatgacagtgaagtattttatttctacactacactatcttttttttaaaatttttttaaaaaattttttactaTGGCCAACCCCATTTCATTTcgagttttaatttaaatacataGTGTGTACATAAATGCATATCATGAGTGTggtttctgaattcattcaaAAAGAAGATGTCTTATGATGTCACTAAGTTATGTGACACAGAACATTAAcataaatagaataataatttatataatttatataatttctagGACAGTGTAACAGGTTATGATATAATGTTTACAGGGTATGCTATCCAGGTTATGCTATAATTTTCCTAAATGCCACAGTGTTGTTAAACCTGATTGTTCTGCACAATATCAGCATTCATACTGTAAATACAAATCTATATTTGTAAACAGTAAAATCTCCATTATTCATTTAGATGAATGGAGTGAAAGTGTTATGTCAGATGACAGATGACATATtgaggaagaaaacactgagAAATAGGGATCTGGGTGTGTCTCATGAGCTGCTTAACACTTATCCAGAACAATACTGTACCAAAGAAATGGTATAAAGACGGCGCTAccatatttacagaaaaaaccTTTTATGTTAATTTTGATTTTACAAGTAAGTCCTCAATTAATAGTTAATCAGGTTTTCAAAAATGAACTGGACCATAATCTATCAGCAGTAAGTGGACTTTATGGGGTTTCTTTATGTGAACTTTTGTTTAGCAAGCTATTCTTTTGGCTCTTTTGTAGTcgccattgtttttttttttttccattggcTCAACTCCTGGGATAGGATATCCAGAATCAGTAACAGTAGCAGTAATCTGCCACCTATTGTTACAGATATGAAGTACAATAGGATATACTGAGCCCTTCTTTAGCAGTTTTCAATAAGATATTTGACTGGGAAAAGGCatttacagtgaggggaaataagtattcggatactttaaaaaaaattaatatacttccagtgcacaTATCCACATTAAATCTActttaaaattacacacataatataattttactttgtatgtaaatatgtaaataagtatgtacagtattcataagcataaaaatacacacacaccacacacaccacacacacataaaaatcaagttctagatataaatgctgcaaagaTTTCCTTATGCAAGATATTGCCATGGGTTAGGAAGTAAAGGAGCTTCCTAATGTTCTCATggacaacattattataacattattaaacaacatttGAACTAAAGAAAGCAACTGAGCCATAGCAAAGACATTAAACATCTCTGACATACAACTGGATtaataatatgcaggtggaaagttcatggaaccacaatTAATCGTCCCCTGGACAGGTGCACCACACAACATTGTACAAAGCACTCTCAGACCAATTATAAAGTAAGAGAGAAGACAGCAATtacttgaaaagagttgcatGACAGCCTGAAAGCAGTAGGagcaacagttacacagagaactataagcaatgaactgcaccacaATCATCTCCATTCCTACAGCCTACCTCACCCAAAACCTTTCAACAAGACATTGACCCCAaccatacagccaaaataactgaAGAAAgccttgcatggcctagccaatctcCCAATTTGAATCTCGCTGAAAATTTATGAAggataaaatgtattaaattgtaAGGTCATCAGTGGGACCCTGATAATCCTGGGGAATTAAAGATgatttgccaagaagaatgggtCAAAccaaaatgctgcaaaaagctaCCTATTTCTTACCATAGGcatctcaaagctgtaattgccaacaacATAATGAGTAATGATGTTGTGAATATGTGGTGTCCGAATACTTTCAATTtcgtttttttaaacatatctttgatATGCTCATGAATACATAcgtttttgttcatatttataagtacataGACAAAATACATTATGTGTCTAAATTtaaagtggatatatgcactagaagtatattaaataacaaaatcaaTAGTCAACGAATACTTATTTCTCCTCACATACACCATTCATTGTC

Function

symbol description
stx19 Located in cytoplasm. Orthologous to human STX19 (syntaxin 19).

NR:

description
PREDICTED: syntaxin-19

GO: NA

KEGG:

id description
K08487 STX11; syntaxin 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913001.2 True 3262 mRNA 0.38 2 15418742 15424049

Neighbor

gene id symbol gene type direction distance location
myo1b myo1b,LOC107664008 coding downstream 205878 15155587 ~ 15212864 (-)
slc35a5 slc35a5 coding downstream 397394 15013261 ~ 15021348 (-)
dipk2b c6hxorf36 coding downstream 514007 14900159 ~ 14904735 (-)
fundc1 fundc1,LOC107673665 coding downstream 561222 14853744 ~ 14857520 (-)
efhc2 efhc2 coding downstream 567340 14842500 ~ 14851402 (-)
rsph1 rsph1 coding upstream 2805 15426854 ~ 15430622 (-)
fbxl3a fbxl3,fbxl3a,LOC107664003,LOC107670904,LOC107549764 coding upstream 11916 15435965 ~ 15441651 (-)
mycbp2 mycbp2,LOC107549765 coding upstream 18335 15442384 ~ 15505351 (-)
vwa8 vwa8 coding upstream 136436 15560485 ~ 15626621 (-)
epsti1 epsti1 coding upstream 320458 15744507 ~ 15761304 (-)
G82961 NA non-coding downstream 44240 15371262 ~ 15374502 (-)
G82943 NA non-coding downstream 206423 15209315 ~ 15212319 (-)
G82904 NA non-coding downstream 293094 15085363 ~ 15125648 (-)
G82864 ccdc80,LOC101480086 non-coding downstream 413983 15002534 ~ 15004759 (-)
G82861 NA non-coding downstream 427256 14991216 ~ 14991486 (-)
G83171 NA non-coding upstream 63034 15487083 ~ 15487834 (-)
G83173 NA non-coding upstream 124232 15548281 ~ 15600586 (-)
G83216 NA non-coding upstream 255401 15679450 ~ 15714440 (-)
G83270 NA non-coding upstream 406080 15830129 ~ 15887375 (-)
LOC117597420 NA non-coding upstream 430011 15854060 ~ 15858049 (-)
LOC117597380 NA other downstream 304047 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 341526 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 581333 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 865247 14538868 ~ 14553495 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 1563556 13762417 ~ 13855186 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 519691 15943740 ~ 15973914 (-)
lmo7a lmo7 other upstream 619234 16043283 ~ 16076620 (-)
G83554 NA other upstream 795915 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 946178 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 1604188 17028237 ~ 17039843 (-)

Expression


Co-expression Network