lamp1b (LOC108266564)


Basic Information

Item Value
gene id lamp1b
gene name LOC108266564
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 10501955 ~ 10505784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913031.2
CAATCACATGACTGCGTTCTTTCTTCCTGGTGCGGTTAGGAGACCAGAGACTCGGGCAcgagacaaaaacaaactggGTTCGTGTGTTTATCCGAGTGAGCTTTAGAGGTGTAGGAAAGAAGCTAATGAGGAAAAACTTCTACAGCCGGCTTTTAAACTGTAGAATTAATTACATTCTTATTAGGAAACGTGTGTTAGTTGGTTAGAGTGCTAATATTagcttaatatatatatattagtgtcTTGGGCCGGTGTGTTTTGGTTTACGCTAGTCACTCCACTGGAAACATGAAACCTCAAAGCCGAAAACACCCTCTGCCTCCTGGACTGACTCTCCTGCTGCTGgCTGTAACGTTATGCCCGAGTTTGTCCAGCGACGTGCTGTCCACCACTTCTGCTCCGACTCCCCCCTCACCTCCCAGTGTCCCCGAGAGAGGGTCCTACAACGTCACCAACAATGGCACCGCGTGCTTGTTGGCCCGCATGGGACTGCAGCTCAACATTACTTACACCTCTCGCTCGCAGGGCAAGGCTGTTCAGGATATCATTAACCTGCAACCAGAAGTGACCAATAGCTCTGGATCCTGTAATGCTGACACTGCAACACTCAAACTCATGGAGGAGAACACAACCTtgactttcttcttctttttgAATTCTACAACTAACAAGTATCACCTTAACGGACTGGCACTGTCAATCAACTTGCCAGACATGTCTCAGCCCTTGATTGTCAGTAACACTAGTCTAGACTACCTTCAGGGAACTTTGGGCTACTCTTACATGTGCCGTCAAGAGCTGATCTTGACTGTTGGGCAGAATTTCTCCCTGAACACGTTCCATCTACAGGTGCAGCCTTTTGGTGTCAATGGAAATGAGTTTGGAGCAGCTGAGGAATGTGGCCTGGATAAAGATGACATGCTGATTCCTATCGCTGTGGGTGCTGCTCTTGCAGGCCTTGTGTTAGTTGTGCTCTTGGCCTACCTGATTGGCAGGAGGAGAAGCCATGCTGGCTACCAGACGATTTAAACCTGCTCATGTAAGCTTGCAAACCAGAATATGCAGCCACTGCTAATCAGTGGATCCTAGCACATTAAAGCCACACGTTTTTACCTGCCCTGCCCTGCCCTCTGCTATTCTCATGCTGCCATTATGCCCATTACCTGAGGTGATCCTGTGACTTCTGGACTTTAAGTTGTATAATAACTGGAAAATAGTTTAAGAATATTTAATCTTGCGCAATTCTGGGCATTCTTTTTGGAACGGGTGATACGTAGCATTACTGAAAGGCCTAGGTCTTAGATAAAGCACAGACTAGCGCTAAAACTGACAAGAATTTCCCTTCATGGTGTGTATAATGAAAGGCTAAAGTAGATTGAAACTGGACCCCAGTGAGAGCCTCAGCTCTGTGCAAGCTCAATATTACAAGTAGGAGCATTACTTAGGGAAAATAGCTgctatagttttatttttcatcacctATAAAAGGGAGTACTTAACACTTCCCCTGCCCCTGACATGATTCAGACTGTAAGGTATGATGGTAAAGATGCAATGTTGTGGAACACAGAGCcatgaaaaaaacagacacagaatTGGTAAATTTGCATTGTACTCagtctgtttccttttttaaaagtgttgtaACAGTGAAATTGCACAGGTAGCCTTGAGTAATTCATACAGTATGCCCAGTGAGAAGCAGCTGAAGAGAGAGATGCATTTATACACAATTGATAGCAAGGCTGCATTCGCTGCACTGAGACCTTTCTCAATACCTCTCAGACCCCATTATCCTCCACTCGAAGGTGCTTCATGCAAGAGTAAACTGGTACTTTTCTTTCCAAACtatcattatttataaagcttACAAGAATATATTTGTAGCATGGATGAGTTCGTATGAAAAACATGGTGGCTTTTTTGATATGTATAGATGTATTTGACATGATAGTTGACTTAACAAGAAAGTTCATTTGCAACAAGTTTCTACTGCTCACTACACATAGCTCACATGTTACTAGCAAACTGTAAACCATTTAGTGTTAAACATCAAGACTGCTTTTCCCATCCAGCATGCTTTGGAACGCAAGAAATCAGTGGCCACTCAACTGGTAAATGAGGATTtcttatatattaatattgcaCTAAGTCCCACTCACAGTATGAAACCACTGTTGAATTGATATAATTTTCATACTGTGAATGTGACTATTTGATATGAACTACTATGGTCTTCATTCTGCTTGTGGGACTAAGCAGCATTTAAtgcttgagagagagagtgtgttgaTATAATTAACTCTTACAGTGCACTGATGTGTTAATGGTGTTTTTATTTGCAACTTGGCCTTAGTGTGAAATGCTTTGGCATAGTGTATTTTGAATGAGGATGATGTGTTGCAATCCATATCTTGCAGGTGTTGTATAACAGTagattatatataaatgcaatgacaaataaaagggaaaaaagtggtT

Function

NR:

description
PREDICTED: lysosome-associated membrane glycoprotein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913031.2 True 2481 mRNA 0.42 6 10501955 10505784

Neighbor

gene id symbol gene type direction distance location
commd6 commd6 coding downstream 6182 10491930 ~ 10495773 (-)
tbc1d4 tbc1d4 coding downstream 18086 10452997 ~ 10483869 (-)
klf12b klf12,LOC107681319,LOC107720110,LOC107668887,LOC107740907,LOC107600382 coding downstream 76792 10387369 ~ 10425163 (-)
dachd dach1,LOC108266692,LOC108426032 coding downstream 163455 10230762 ~ 10338500 (-)
clybl clybl,LOC107681316,LOC107748615,LOC107600379 coding downstream 337658 10097231 ~ 10164297 (-)
pou2f1b LOC108266565,LOC108426038 coding upstream 11423 10517207 ~ 10538871 (-)
LOC113523755 nxpe3 coding upstream 129581 10635365 ~ 10646195 (-)
LOC113546580 NA coding upstream 169599 10675383 ~ 10689789 (-)
LOC113526085 nxpe3 coding upstream 188077 10693861 ~ 10717168 (-)
LOC113526121 LOC108266494 coding upstream 488265 10994049 ~ 10997825 (-)
G79903 NA non-coding downstream 724566 9775806 ~ 9777389 (-)
G79933 NA non-coding downstream 728678 9772634 ~ 9773277 (-)
LOC113525888 NA non-coding downstream 735379 9764485 ~ 9766576 (-)
G79923 NA non-coding downstream 743786 9757930 ~ 9758169 (-)
G79920 NA non-coding downstream 745990 9755741 ~ 9755965 (-)
LOC117597353 NA non-coding upstream 115753 10621537 ~ 10622344 (-)
LOC113526087 NA non-coding upstream 213350 10719134 ~ 10721674 (-)
G80463 LOC108266368 non-coding upstream 266604 10772388 ~ 10775221 (-)
G80464 NA non-coding upstream 270258 10776042 ~ 10776341 (-)
G80526 NA non-coding upstream 403389 10909173 ~ 10931379 (-)
si:dkey-83m22.7 NA other downstream 847500 9632685 ~ 9654455 (-)
G79826 NA other downstream 932835 9568555 ~ 9569120 (-)
LOC113525856 mob4,hspe1,LOC108266284,LOC106582314,LOC106586370,LOC105016277,LOC101078365,LOC101472107,LOC104932517,LOC103156730,LOC106530744,LOC100701317,LOC102310674,LOC103391647,LOC108238849,LOC107690609,LOC107731766 other downstream 970284 9520729 ~ 9531671 (-)
cnga4 cnga4 other downstream 1353308 9099536 ~ 9148647 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other downstream 1482507 8996783 ~ 9019448 (-)
LOC113526229 nxpe3 other upstream 89656 10595440 ~ 10614287 (-)
G80600 NA other upstream 463633 10969417 ~ 10971157 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other upstream 512495 11018279 ~ 11035561 (-)
LOC113546407 NA other upstream 792084 11297868 ~ 11302844 (-)
mphosph8 mphosph8,LOC107658258 other upstream 944428 11450212 ~ 11460325 (-)

Expression


Co-expression Network