LOC113526203


Basic Information

Item Value
gene id LOC113526203
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 11698385 ~ 11701033 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913038.2
ATGGACCTTTGGAACATCACCTTTAAGGTTACTCAGGCAGCCTCCAGCTTTGGCGCCGACATGCTGACTGTTATCACGGGGAACAGAGACGGGTTTAATTTAAATCAGGAGTTAAATGAGGAATCCTTAATCCTAAACCAATTCAAATGCTTAAGCAGATTTGCTGTTTTTGTAGTTCTTTCACCCATTCTCTGCTCCCCCAGGTCTGCCTCGTTCTCATACGTAATAGTTGTAGTCGTACTGACTATTCTGTACTGTATACCAGAGCTACTGAAATTCCTCACTCAGAACGTGAACTCCAGGAAGAGTAAGAATGTGGACATCCTTTGGCAGGCAGCAGAGGTGTGCCGACGTCTCAATGGTGTGAGGGTAACCAGCTGTAAGAGTGCAAAGGACCGCACAGCTATGTCTGTAGCTCTGGAGCAGTGTCTGATCCTGCAGCAGGAGCACTGCATGGCCCCACAGGTCTTAAGTCAGGCCCTGGACTGCATGCACAGTGAGGGCTGCAGGAGAGAGAACACCATGAAGAATGTGGGCAGCAGGAAGTATGCTTTCAATTCACTTCAACTGAAGGCCTTCCCCAAACAGTATAGACCTCCAGAGGGTACTTATGGTAAAGTGGAGACTTGATTGGGACATTCATCTATGCCCCCTCCTACTGTTTTTCACAAGGCTGTTCTCCCCCATCATCCCCTTTACTTTGTTTCCACTGATCTGAAGCAAATGCTGCAGTGAATTCAGTCAAATAAACACTCACTGTAAATGGCCAAATAGGGTTGTAGTTTGACACAAGTTTGCATGAGTCACTGCTCTCTTCTGAACTTTGGGTACTATATCAAGGTGACCATGAGGAATACTTATTGGAAGAGTTTGATTGGGAGAGTAGGACTCCATTCATCCAGCAACAAAAACACTCAGCAACTACACTAAGCTAATCTGTTAAGGAATTACAAGTGCAAATTGCACAGTTCCTTTAGTTTGTGTTTGGTCTCTACCGAACCTCAGTTTCACATACCCAGATTCAATGGATACATAAATGAGTATTGTTCTTTTTCCATTCATTAAACGTGCACATTATACTGTAGCTGAACTGTAGCGTCAGTGATGTGACAGAGTAAGTCTTATCAAGTCATATGCTATCACAAGGCTATACATATAATGCTTTAAATCAACCCTTTAGCTTATTGACAGCAACAGTATGCATTTTACGGGTTGTAGATTTTCAGGGAAAGGGCCTTTCTCATGCTGTTGCTAAGCACAGGTAATGTTTGTATAGTTAATATAGTGGAATGTTGTGAATAGATATtaacataattttaataaagttgtgtaAGATAATTAAGACACTATTCAATCAGTTGTTGGTtgttaaatgtttgtatttgtgttatgTAAATCTCTTTTGGTTTGTGTCGATATCAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913038.2 True 1425 mRNA 0.42 5 11698385 11701033

Neighbor

gene id symbol gene type direction distance location
si:dkey-4e7.3 LOC108266854,LOC108431471 coding downstream 649 11692405 ~ 11697736 (-)
mrpl30 mrpl30 coding downstream 53296 11641241 ~ 11645089 (-)
aff3 aff3 coding downstream 216802 11461851 ~ 11481583 (-)
zmym2 zmym2 coding downstream 250702 11426831 ~ 11447683 (-)
ift88 ift88 coding downstream 306543 11376196 ~ 11391842 (-)
LOC113524909 inpp4a,LOC107676472,LOC107602877 coding upstream 9575 11710608 ~ 11737744 (-)
mfsd9 mfsd9,LOC106581991 coding upstream 46993 11748026 ~ 11756862 (-)
fhl2a fhl2a,fhl2,LOC108266723,LOC107716797,LOC108431475,LOC107676452,LOC107688730 coding upstream 186835 11887868 ~ 11895080 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding upstream 265461 11966494 ~ 11995666 (-)
st6gal2a st6gal2 coding upstream 314412 12015445 ~ 12049701 (-)
G81014 NA non-coding downstream 8417 11688535 ~ 11689968 (-)
G81012 NA non-coding downstream 11143 11686981 ~ 11687242 (-)
G80995 NA non-coding downstream 52399 11645391 ~ 11645986 (-)
G80988 NA non-coding downstream 96227 11601908 ~ 11602158 (-)
G80972 NA non-coding downstream 137799 11560380 ~ 11560586 (-)
LOC113526311 NA non-coding upstream 59418 11760451 ~ 11763719 (-)
LOC117597344 NA non-coding upstream 143843 11844876 ~ 11857267 (-)
G81220 NA non-coding upstream 340601 12041634 ~ 12045475 (-)
G81221 NA non-coding upstream 349334 12050367 ~ 12050654 (-)
G81222 NA non-coding upstream 350385 12051418 ~ 12051772 (-)
mphosph8 mphosph8,LOC107658258 other downstream 238060 11450212 ~ 11460325 (-)
LOC113546407 NA other downstream 395541 11297868 ~ 11302844 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other downstream 662824 11018279 ~ 11035561 (-)
G80600 NA other downstream 727228 10969417 ~ 10971157 (-)
LOC113526229 nxpe3 other downstream 1084098 10595440 ~ 10614287 (-)
irs2b irs2 other upstream 781628 12482661 ~ 12507688 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other upstream 1012032 12713065 ~ 12728037 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other upstream 1490681 13191714 ~ 13250548 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other upstream 2061384 13762417 ~ 13855186 (-)
med14 med14,LOC107756768 other upstream 2837835 14538868 ~ 14553495 (-)

Expression


Co-expression Network