dlx1a (dlx1,dlx1a,LOC107742982)


Basic Information

Item Value
gene id dlx1a
gene name dlx1,dlx1a,LOC107742982
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17095074 ~ 17097982 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913117.2
TAGCCGTTAACTAAATCTAGTTTCAggtagaaaagagaaaatgcgTTCATTAAGCATGTTTTATGCAACAGAATATTACCAATGCCTTATTATGTGTGAATTATTTGTTTCTCTGTTTGGGCGATTTGTTTTAATAAACGAgagattaaaaacaacaacaacaaaacagcattTCTCAGTGACCCTCCCCTGAATTCCCTTTTTAGCCTTGAACATTTGGCTCTCAGGTTTGTCTTATTTCTCGTGTTATCATATTCCTCGGACCCTACCCCGAGCTCTCCAATCCCCGCCACGCTTGGAGCGGGtggaccaatcagagagcagcttggataaatattcatgattccctGATTCAAACGTTTGAGCGAGTTTGTGTAGATCCGCCGCATCACACCTAGACTTTTCACAGAGACAAACTACATTTTCTTATGAATGGAAAGTGAAAAAATCAGTTCAGCTTAAATTGGGATCCATCCTTCACTGAGatagaagaaaacaaaaaaaggcaggAGAAGAGAGATTCGCACTGAAGACATGACAATGACCACAATACCAGAGAGTCTAAACAGCCCCGTCTCAGGAAAGAGCGTTTTCATGGAATTTGGGCCACCAAGTCAACAAATGTCGCCTTCATCTATGTCTCACGGACATTATTCAATGCACTGTTTACATTCAGCCGGTCATCCTCAGCACGACAGCTCGTACAGTCCCGCTCCGTCTTTCCCCAGATCGCTGGCTTATCCATATGTCAACTCAGTCGGTAGCCATTCGTCAAGTCCATATCTCAGTAGCGTTCAGACTTACCAAAACAGCACGGCGTTAACGCAGACGCGCTTAGAAGACGCAGCACCAGAAACGGAGAAGAGCACGGTGGTGGAGGGAGGAGAGGTGCGCTTCAACGGAAAGGGGAAAAAGATTCGCAAACCTCGGACTATCTACTCCAGCCTCCAGCTGCAGGCGCTGAACCGCAGATTTCAGCAGACGCAGTACCTGGCGCTGCCGGAGAGAGCAGAGCTGGCCGCGTCTCTGGGGCTCACACAGACCCAGGTCAAGATCTGGTTTCAGAACAAACGATCCAAGTTTAAGAAGTTGATGAAGCAAGGCGGAGGAAGCATAGACACGAGCGCACTGGCCAATGGCCGCGGACTGAGCGCCGGTTCGCCCTCCGTGGCGCCCGTATGGAACTCATCCGCTAGCGTTAAAACCTCCGTCGGCACGCCGAGCTCGTACATCCCGAGCTACACCTCTTGGTATCCCAGCACGCACCAGGACTCTATGCAGCAGCCGCAGCTCATGTGAAGGCAGTGCTTAGCGGACCCCGCCCCTCTTCCTTCGCGGAGGACCCGGATGAGGGGAGCACGCGACCCTGCCGCCCGGCTCTCCGGCCCTCAGCCCATACAGTACAGACTGCGATCACACACCGCGATCACACCGGAGCACACCGCACAAGCACACCGACACACCGGCAGCAACAGCCTGGAGGCCGAGACACTGAGAAAGAAGCGTCTGCGGCGGAGGAACACGTTTCCCTCCTTTACTTTCAGAGCGGATTTCCCAGACAGTTGGGTCAAATGAAGCTGCTCCTGATATTTCCTTTTTACCTGACATTTtactgtgtgtaaaacattatataaagctgtaacacgtgaaaaaaaaaatatttactcatGTTTCAGACTGGCATTTTTGCCTGGAGAATGGAACAAATGCGTTTATTTGGCATGATTTACCTAAAAGCAACAGTCTGCCTTTTTACAGCCGCCAGTTGTTAATATCTACACGCAAAAAACATATCTTACATAGACTATATTTTCTACAGAGAAGGGGGAATGGGTTGTGCTGTGCCAGGCTCTGAGCATTTGGAATAGTATAGGGTAAAATCATGCGAGGAGCCTGGTTCTCCTGAGTCCAAAGAGCAAATCTTTATAGGCTAACTTAAGTCATTTTGGCAGTGTGGAGcttctttgtgtgtttatttaaagtaaCTTATTTAGATTTCGTTTATGTCCgtttgtatgtttatttaaaatgaatgttctTTAAAAGATATGGCTGCACTAAAGTGAGCAACACTTTACTTTGATTGGAGATGAATTTAAGCCGAGTGCTTGTATCCCCATCCCAC

Function

symbol description
dlx1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cartilage development and embryonic viscerocranium morphogenesis. Predicted to be located in nucleus. Is expressed in brain; head; and ventricular zone. Orthologous to human DLX1 (distal-less homeobox 1).
dlx1 Enables sequence-specific double-stranded DNA binding activity. Involved in cellular response to growth factor stimulus; negative regulation of cellular response to growth factor stimulus; and regulation of transcription by RNA polymerase II. Located in nucleus.

NR:

description
homeobox protein DLX-1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09314 DLX1_4_6; homeobox protein DLX1/4/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913117.2 True 2125 mRNA 0.47 3 17095074 17097982

Neighbor

gene id symbol gene type direction distance location
itga6a itga6,itga6a,LOC107745248,LOC107742949,LOC107671295,LOC107657398 coding downstream 23266 17052057 ~ 17071808 (-)
tlk1a tlk1 coding downstream 69544 17002118 ~ 17025530 (-)
mylka LOC108266375,LOC108424386,LOC107559533 coding downstream 419807 16617571 ~ 16675267 (-)
fmnl2a fmnl2 coding downstream 480891 16562674 ~ 16614183 (-)
galnt13 galnt13 coding downstream 578787 16472059 ~ 16516287 (-)
hat1 hat1,LOC106581768 coding upstream 32008 17129990 ~ 17148675 (-)
dync1i2a dync1i2 coding upstream 78699 17176681 ~ 17209898 (-)
ppp1r9ala LOC108266327 coding upstream 118739 17216721 ~ 17249832 (-)
cir1 cir1 coding upstream 339176 17437158 ~ 17443522 (-)
gpr155a gpr155 coding upstream 351898 17449880 ~ 17464276 (-)
G83953 NA non-coding downstream 128901 16965511 ~ 16966173 (-)
G83614 NA non-coding downstream 685181 16409428 ~ 16409893 (-)
LOC117597324 NA non-coding downstream 866637 16224341 ~ 16228437 (-)
G83474 NA non-coding downstream 1022003 16072840 ~ 16073071 (-)
G83473 NA non-coding downstream 1022390 16072397 ~ 16072684 (-)
G84061 NA non-coding upstream 29328 17127310 ~ 17128680 (-)
G84177 NA non-coding upstream 209587 17307569 ~ 17311955 (-)
G84182 NA non-coding upstream 226063 17324045 ~ 17324878 (-)
G84189 LOC108266646 non-coding upstream 234510 17332492 ~ 17346350 (-)
G84227 NA non-coding upstream 293702 17391684 ~ 17391947 (-)
mettl8 mettl8 other downstream 55231 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 688596 16370227 ~ 16406478 (-)
G83554 NA other downstream 874208 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 1018454 16043283 ~ 16076620 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 1121160 15943740 ~ 15973914 (-)
sp3a sp3 other upstream 273997 17371979 ~ 17381172 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 597308 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1815405 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 2345109 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 2470767 19568749 ~ 19586103 (-)

Expression


Co-expression Network