cir1 (cir1)


Basic Information

Item Value
gene id cir1
gene name cir1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17437158 ~ 17443522 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913145.2
cCGAACGATGCGTCACTAGTAAACAGGCCGTGTTGGTGGTAGTTTGAGGCTGTTCTTTCTGTGGTGTTGTTATCCGTGTTCAGCCATGGGGAAGTCGTTTGCTAATTTTATGTGCAAGAAAGATTTTCACCCAGCGTCAAAATCCAACATAAAGAAGgTATGGATGGCAGAGCAGAAAATAACCTTCgagaagaagaagcaggaggAGTTGATGCAGGCATATGTGAAAGAGCAGGAGACCTACAACAACAGACTGCTGATGGGTGATGAAAGAGTGAAAAATGGCCTGAATTTTATGTATGAAGCTCCTCCTGGTGCATCCAAAGAGGAAACCAAAGAGGAAGGAGAAGCGGAGTATAAGTTTGAGTGGCAGAAGGTTGCTCCTCGTGAAAAGTACGCTAAAGATGACATGAACATCAGAGATCAGCCTTTTGGGATCCagGTGCGGAATGTACGGTGTATCAAGTGTCATAAGTGGGGTCATGTGAACACAGACAGGGAGTGTCCTCTCTTTGGACTGTCTGGAATCAACGCCAGCTCTGTAGCAAATGATGAAGCAgGCCCGTCGATGCACCCCTCCGAGTTAATGGCAGAGATGCGGAACAGTGGGTTTGCGCTGAAGAAATGTGTCCTTGGGAGGAACGCCACTGTTTGTGATCCAGCACAGGGGTTTGTGGCcagtgaggaagaagaggatcCTGAAGTCGAGTTCCTTAAATCTTTAACCACGAAGCAGAAACAGAAGCTCCTcagaaaacttGACCGgctagaaaagaaaaaggacaagaagaagaagagtaaaaaggagaaaaagaagaaacgcaaacagaagaaaaagacgACTGAGAGTTCCTCCAGCAGCACCTCGGACAGTAGTAGCAGCTCTGAGTCTGAATCTGAAAGACACAAAgctaaaaaagagaagaaggtgaaaaagaagagaaggagagactcATCCAGTGAGAGCAGTTCTGACAGTGAGAGTGAAGGAAGaccaagaggaaaaaacaagGAGCCTTGCAATAGAAACCGCATTCAGAGTCCTGATTCTAAGCATAGCCGAGACAAACATGAGCGCACAGAGTCAGACGAGCAGGACAGACGACGAGaaaaaggtcagaggtcaccaCATAGAAAAGAAAGCCTGCAGAATGAGAGCAAAGAGACAGAATGGAGGAATAAGGACAGGGAGAGAAGAGGGGGCGAAAGAGAGAAGGGTGAACATAGAATCAGCAGAACCAGGGATGGTGAGAGAAATAGGAGTTTgagtggagagagaggaaggaaaaggaGGGAGAAGAGTTGGGATAATGAAAGGATaagggagaaggaaaggaatgCCAAACAAAGAAGTGTGAGTAATGATCAAggtagaaatgaaaaaagaaggagTCAAAGCCGGGATAGACAACAAGAGAACAAGGcgaggaggaaagagaggagTGATAGTTTTGAACGAAGTAGAGGTGGAAAAGGAAGAAGTAGGAGtagggagagagtgagaagcAGGAGTAGGGAGAGGATAAGAGAGAGGAATGGGAGTAAGGAACGAGTAATGATCAGGAGTAGGGAGACAGTGAGGGATGGGAAGGAAAGGAACAGAAGTCCATGTCGGGGCGATAGGAAACGATGAGGGAGAAGCAGAGACACTGAAATGACGTTTTCCTATTGCTGTAATGTATGATTTGCGTTTAATGTGAAACTGTATTGGGCATACAATGATCTGTAATGTTTTTACTCCTTTAAATATTAAGTTTTGCGTCAATCTTTAGTTTTCAGAGTTTGCTTTTGGTGTATTAAAAGTGGCTTGTATATCTGA

Function

symbol description
cir1 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
corepressor interacting with RBPJ 1

GO: NA

KEGG:

id description
K06066 CIR; CBF1 interacting corepressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913145.2 True 1819 mRNA 0.45 10 17437158 17443522

Neighbor

gene id symbol gene type direction distance location
ppp1r9ala LOC108266327 coding downstream 187326 17216721 ~ 17249832 (-)
dync1i2a dync1i2 coding downstream 227260 17176681 ~ 17209898 (-)
hat1 hat1,LOC106581768 coding downstream 288483 17129990 ~ 17148675 (-)
dlx1a dlx1,dlx1a,LOC107742982 coding downstream 339176 17095074 ~ 17097982 (-)
itga6a itga6,itga6a,LOC107745248,LOC107742949,LOC107671295,LOC107657398 coding downstream 365350 17052057 ~ 17071808 (-)
gpr155a gpr155 coding upstream 6358 17449880 ~ 17464276 (-)
wipf1a LOC108267026 coding upstream 22166 17465688 ~ 17472291 (-)
LOC113547453 chrna1,LOC108266097 coding upstream 29593 17473115 ~ 17482009 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC106590032 coding upstream 42526 17486048 ~ 17523051 (-)
atf2 atf2,LOC107739459,LOC107671311,LOC107657392,LOC107742976 coding upstream 86415 17529937 ~ 17556165 (-)
LOC117597450 NA non-coding downstream 5727 17407218 ~ 17431431 (-)
G84227 NA non-coding downstream 45211 17391684 ~ 17391947 (-)
G84189 LOC108266646 non-coding downstream 90808 17332492 ~ 17346350 (-)
G84182 NA non-coding downstream 112280 17324045 ~ 17324878 (-)
G84177 NA non-coding downstream 125203 17307569 ~ 17311955 (-)
G84394 NA non-coding upstream 283131 17726653 ~ 17727997 (-)
LOC117597384 NA non-coding upstream 297115 17740637 ~ 17744025 (-)
G84411 NA non-coding upstream 389853 17833375 ~ 17833589 (-)
G84881 NA non-coding upstream 687888 18131410 ~ 18131998 (-)
G84880 ino80d,LOC106582458 non-coding upstream 689880 18133402 ~ 18133689 (-)
sp3a sp3 other downstream 55986 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 397315 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1030680 16370227 ~ 16406478 (-)
G83554 NA other downstream 1216292 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 1360538 16043283 ~ 16076620 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 251768 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1469865 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1999569 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 2125227 19568749 ~ 19586103 (-)
G85848 NA other upstream 2783206 20226728 ~ 20237615 (-)

Expression


Co-expression Network