itga6a (itga6,itga6a,LOC107745248,LOC107742949,LOC107671295,LOC107657398)


Basic Information

Item Value
gene id itga6a
gene name itga6,itga6a,LOC107745248,LOC107742949,LOC107671295,LOC107657398
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17052057 ~ 17071808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913150.2
GGAGCCTAAAGCGCAGTGCGCTCCACAGGAAAAGAGCGCACATATATTCCCACTGTGCCCATACAAACACTATGGAGATTTCAGGACTGTGGATTTCTCTCAGTGTGAGgatttctctctttttgctACTATGGGCAGGTGCAAGCGCATTTAACTTGGACACAAAAAACGTGTTGAGGAAGAACGGGGATCCCGGCAGCCTCTTTggtttctctctcgctctgcaCCGGCAGCTACAGCCAGTGGATAAGAGAATACTTCTAATTGGAGCTCCCAGGGCCAAAGCTTTATCCAATCAGGGTGCGAACATCACTGGGGGTTTGTACAGCTGTGAAATCACTACTCATTCGGATGACTGCAATCGGATTGAGTTCGACAATGATGCTGATATGCGTGTGGAGAGTAAAGAGAATCAGTGGATGGGGGTGACTGTGCAGAGTCAGGGGCCAGGGGGAAAGATTGTGACTTGTGCTCACCGGTACCAGCGACGGCTGTTTGTAAACACACCACAGGAGTCACGGGACATTACCGGGCGCTGCTACGTACTCAGTCAGGATTTCAGCATTGATGGCCAGTCAGATGAAGATGGTGGCAACTGGAAATTCTGTGAAGGTCGTGCCAGGGGTCACGAGAGGTTTGGTGCCTGTCAGCAAGGTCTGGCTGCAACTTTCACCAAAGACTACCATTACGTCATTTTTGGAGCCCCAGGAGCTTATAACTGGAAAGGAATTGTGCGAGTagagcaaaaaaacaacactctCCTCGAAATGGGCTTCTATGATGACGGCCCATATGAGGTTGGGGATGAAAGCCGCTTGGATCCAGAACTGGTGCCTGTACCTGCTAACAGTTACTTAGGTTTCTCTCTGGATTCTGGCCACAACATTACTGAGAAGGGCAAACTGATTGTGGTGTCTGGCGCTCCGAGAGCCAATCACAGTGGAGCAGTGGTGCTGCTGAGGAAAGAGGGTGAGGTGTCCACCATGCTGTCGCCTGAGTATGTGCTAGAAGGACCTGGACTTGCCTCTTCATTTGGATATGACGTAGCAGTTGTGGATCTCAATGGAGACGGATGGCAGGACATTGTGGTGGGAGCTCCTCAGTTTTTCCAGAGAGATGGTGAGGTTGGGGGAGCGGTGTATGTCTACATCAACAAGGCCGGAAAGTGGAGCGCTGTCGTCCCCACCCGCCTCAATGGAACTAAAGACTCAATGTTTGGACTGGCGGTGGACAATATTGGAGACATCAATCTGGATTCCTATGAAGATATTGCAGTTGGTGCTCCTTATGCAGATGCAGGCTCTGGCAGAGTGTACATCTATCATGGATCAGCTTATGGCATTAACACCAAACCAGCTCAGATTCTGGAAGGTAGACCTCATGGCATAAACATGTTTGGCTATTCATTGGCTGGGAACATGGACTTGGATGACAACTCCTACCCAGATCTTGCCATTGGATCTCTGTCTGatgctgtgtttgtgtacagGGCCAGACCTGTCATCAGCATAAAGAAGGAAATCAAGGTTACACCAAAGGAAATTGACCTGACAAAGAAAACGTGTGGAAACAGTATTTGTTTGAATGTTGAAGTCTGCTTTACCTATAAAGCAAATCCTGTTACTTACAACCCCAAACTGACCATTTCCTACATGCTTGAGACAGAGTCACAACGCAGAAAGCAGGGGTTGCACTCTAGAGTGTCCTTCCTGGATAAAAAGCCAACTGATCAAGATTTCCAGTCTACAGGCACATTAGACCTGAGAGGGCAGAACAAGAAATCTTGTCACAAAGTCAAACTCCGACTGCAGGAGAACATCAAAGACAAGTTGAGAGCAATCCCCATCGAGGTGTCCTGTGCCATTGAGAGTGCTAGGAGAGGGAAAAGTCCGACCTCACTACCAGAGCTGCTGCCTGTGCTGGACTCAAATATACCAAGCAAGACCACCACTGAAGTGAACTTCCTGAAGGAGGGGTGTGGTTCTGACAACATATGTCAGAGTAACCTGCAGCTCCAATACAGATTCTGTTACCGAGAGTCCAACCAGGACATATTTCCTCCATTACCTATGGAGAATGATATTGCAGTGGTGTCTCTGAGTGACCAAAAGGACATTGCTCTGGAGGTAACAGTGAAGAATAGGAATGGAGATGATGCTCATGAAGCCAAACTAATGGGATGGTTTGGTGATTCGCTTTCATACTCTGGATTCAGATCTCAGAAAGCTACAGACAAGCACGTGATCtgtgcagccaatcagaatggcTCACAAGTAGACTGTGAACTGGGGAACCCATTCAAAAGAGATTCTGAGGTCACTTTTTACATTATCCTGAGCACTGCCAGGATCTCCCTCCACACCACTGAGGTTGAGGTTGACCTCCAGCTAGAGACAACGAGTCTGCAGGGGGGTTTAGAGAGAGTGAGGGCTAAAGCTAAAGTCGTGATTGAACTTCTGCTATCAGTGCAAGGGGTTGCCAAGCCCTCACAGGTGTACTTTGGAGGGAATGTTAGAGGAGAGAGCGCCATAAAATCAGAGGAAGAAGTTGGCAGTTTGATTGAATATGAATTTAGGGTAATGAATTTAGGCAAGCCACTGAAATCATATGGCACAGCCTCCATCAATATCCAGTGGCCTAAAGAAGGTGCTCTGGGGAAATGGCTTCTGTACCTGGTGAAGATCACCTCGAAAGGGCTGGAGCAGATCACCTGCTCACCAGAGAATGAGATCAACCCAAATGGCCTGATTGAAGGATCCACTTTCTCCAGAAGGAAGCGTCAGGTGGACCCAAGCAGGACATCTGAAGGGAGGAAAATATCTCTTTTCACagataaaagaaaatacaaaactcTGTCATGTGCTGGGGATGTGAAATGTGTGGACATCAAGTGCCCTCTACAGGGCCTGGACAGTAGTGCGCACATTGTACTGAGGTCTCGCCTTTGGAACACGACTTTCCTTGAAgatTATGCCTCATATAATTATCTCGACTTGATAGTGAAAGCCTCAATCAGTCTTGATGTTTCTGCTAAGAACATTGTGCTGAAGAATCCTGAGACACAGGTGAGATTGACTATCTTCCCTGAAAATACAGTGGCTCACTATGGTGGAGTGCCATGGTGGATAATTCTAGTGGCCGTACTAGCAGGAATACTGATGCTTGCTCTGCTAGTGCTTCTACTCTGGAAGTGTGGATTTTTCAAACGTTCCAAGTATGATGACAGCATTCCTAAGTACCATGCTGTGAGGATCCGTAAGGAGACGCGCCACTTTACAGATGAAAGCATCATGTTTGATCCATTTGAGAAGAAGCAATGGATGACTATATGGAATGAGAATGAAAGTTACTCCTGAGACTTTTACCTCACTAATGTGAGAGACTTTAGGACTTTCTGGAGTCCACTAAATATAATGGAGCCTGGATTCAGGACTTTGCACAGTCTGTGTTGTTACAATgaagaaacacaaaacaaaagactCCTTTCATGCACTGGTTTGTAACACAACAAAGGTGTCAAGTCTTAAAATACCAAGCAAATGATAAGTGTCATTTagagatatttttttgttttgatatttGTATACAGAATTGGGACCAGCCTTTAAAAATGCCTATTTGTACAATTCTGGATGATTACTGGACTACTGTAACTGattttaaatctgtaaatattgaACTGTACTTGCATagtgcttatttattttctgtcttatttaaTTAGCCAAAGGTTCTCCAGGTTCTTTCTAAAACTGTGAAATTTGCTTAAAATACAAACGTCAAGCAGATTATAAGGATAAAATAACCTGATATGCACAATGGATGAAAGCAATCTAGCACACTATATGGCAGGGTTTTATATTTGGGGATTCGCTGctcatatttatgcatatactgtatgtgagtTTTTGCTGCTGAGTAGATATTAGATCAGAAACAGATGTGGCTAGGAACTGCAAAAGTAAACTGATTATTGGGATCAAGAAGAGAACATACAAAACAAGTCCAAAGTACTTATCCAGGAATACACAGTCTGACTACTGTGCGTTTCAGTGCCTATAGGTGTGTGTTTCCAGAAGTACCGTATCCATTTgattttactgaagaaaaactcaGCAGGTTTAATTACCAGGAACTTTGGTAGCTGATGTACAAGTACATATGGACTGACTGAATAACTTTGAATGTTTTGTTGTACCCCTTAATTAGATTACTCTGTTTGTATTACAGTATGTGATCTGAACCAGTAAATCTGTAGTTTGCGCTCAGTGAACTTTAGTAATATTTGCAGCTGAAAATGGAGATGACGCTTCATCTCACTGGCCATGTTATAGATGCACCTACTCTAGTTAAAACCAATAAGCCATTAAGTAACATATAAAGCATGATAGGgtatgctattataggaaaataatcagttatggggtggtgtgatgccatAACCACCCACAAAACACCACATCCCTAATCGTTTTGTTCcttctataccacagcaatttgccaatgattacaattttttattaattcatgaacaacacatcatactttttatccctttattgttacatttaaggGTTTGGAACTTTAGCacaacaagttagttcctgttatctaacttgttagttcctgtaattcttggtccctcaccagcctctcttttaaatttaataagacggaaaaaaaaaccacgca
>XM_026913152.2
GGAGCCTAAAGCGCAGTGCGCTCCACAGGAAAAGAGCGCACATATATTCCCACTGTGCCCATACAAACACTATGGAGATTTCAGGACTGTGGATTTCTCTCAGTGTGAGgatttctctctttttgctACTATGGGCAGGTGCAAGCGCATTTAACTTGGACACAAAAAACGTGTTGAGGAAGAACGGGGATCCCGGCAGCCTCTTTggtttctctctcgctctgcaCCGGCAGCTACAGCCAGTGGATAAGAGAATACTTCTAATTGGAGCTCCCAGGGCCAAAGCTTTATCCAATCAGGGTGCGAACATCACTGGGGGTTTGTACAGCTGTGAAATCACTACTCATTCGGATGACTGCAATCGGATTGAGTTCGACAATGATGCTGATATGCGTGTGGAGAGTAAAGAGAATCAGTGGATGGGGGTGACTGTGCAGAGTCAGGGGCCAGGGGGAAAGATTGTGACTTGTGCTCACCGGTACCAGCGACGGCTGTTTGTAAACACACCACAGGAGTCACGGGACATTACCGGGCGCTGCTACGTACTCAGTCAGGATTTCAGCATTGATGGCCAGTCAGATGAAGATGGTGGCAACTGGAAATTCTGTGAAGGTCGTGCCAGGGGTCACGAGAGGTTTGGTGCCTGTCAGCAAGGTCTGGCTGCAACTTTCACCAAAGACTACCATTACGTCATTTTTGGAGCCCCAGGAGCTTATAACTGGAAAGGAATTGTGCGAGTagagcaaaaaaacaacactctCCTCGAAATGGGCTTCTATGATGACGGCCCATATGAGGTTGGGGATGAAAGCCGCTTGGATCCAGAACTGGTGCCTGTACCTGCTAACAGTTACTTAGGTTTCTCTCTGGATTCTGGCCACAACATTACTGAGAAGGGCAAACTGATTGTGGTGTCTGGCGCTCCGAGAGCCAATCACAGTGGAGCAGTGGTGCTGCTGAGGAAAGAGGGTGAGGTGTCCACCATGCTGTCGCCTGAGTATGTGCTAGAAGGACCTGGACTTGCCTCTTCATTTGGATATGACGTAGCAGTTGTGGATCTCAATGGAGACGGATGGCAGGACATTGTGGTGGGAGCTCCTCAGTTTTTCCAGAGAGATGGTGAGGTTGGGGGAGCGGTGTATGTCTACATCAACAAGGCCGGAAAGTGGAGCGCTGTCGTCCCCACCCGCCTCAATGGAACTAAAGACTCAATGTTTGGACTGGCGGTGGACAATATTGGAGACATCAATCTGGATTCCTATGAAGATATTGCAGTTGGTGCTCCTTATGCAGATGCAGGCTCTGGCAGAGTGTACATCTATCATGGATCAGCTTATGGCATTAACACCAAACCAGCTCAGATTCTGGAAGGTAGACCTCATGGCATAAACATGTTTGGCTATTCATTGGCTGGGAACATGGACTTGGATGACAACTCCTACCCAGATCTTGCCATTGGATCTCTGTCTGatgctgtgtttgtgtacagGGCCAGACCTGTCATCAGCATAAAGAAGGAAATCAAGGTTACACCAAAGGAAATTGACCTGACAAAGAAAACGTGTGGAAACAGTATTTGTTTGAATGTTGAAGTCTGCTTTACCTATAAAGCAAATCCTGTTACTTACAACCCCAAACTGACCATTTCCTACATGCTTGAGACAGAGTCACAACGCAGAAAGCAGGGGTTGCACTCTAGAGTGTCCTTCCTGGATAAAAAGCCAACTGATCAAGATTTCCAGTCTACAGGCACATTAGACCTGAGAGGGCAGAACAAGAAATCTTGTCACAAAGTCAAACTCCGACTGCAGGAGAACATCAAAGACAAGTTGAGAGCAATCCCCATCGAGGTGTCCTGTGCCATTGAGAGTGCTAGGAGAGGGAAAAGTCCGACCTCACTACCAGAGCTGCTGCCTGTGCTGGACTCAAATATACCAAGCAAGACCACCACTGAAGTGAACTTCCTGAAGGAGGGGTGTGGTTCTGACAACATATGTCAGAGTAACCTGCAGCTCCAATACAGATTCTGTTACCGAGAGTCCAACCAGGACATATTTCCTCCATTACCTATGGAGAATGATATTGCAGTGGTGTCTCTGAGTGACCAAAAGGACATTGCTCTGGAGGTAACAGTGAAGAATAGGAATGGAGATGATGCTCATGAAGCCAAACTAATGGGATGGTTTGGTGATTCGCTTTCATACTCTGGATTCAGATCTCAGAAAGCTACAGACAAGCACGTGATCtgtgcagccaatcagaatggcTCACAAGTAGACTGTGAACTGGGGAACCCATTCAAAAGAGATTCTGAGGTCACTTTTTACATTATCCTGAGCACTGCCAGGATCTCCCTCCACACCACTGAGGTTGAGGTTGACCTCCAGCTAGAGACAACGAGTCTGCAGGGGGGTTTAGAGAGAGTGAGGGCTAAAGCTAAAGTCGTGATTGAACTTCTGCTATCAGTGCAAGGGGTTGCCAAGCCCTCACAGGTGTACTTTGGAGGGAATGTTAGAGGAGAGAGCGCCATAAAATCAGAGGAAGAAGTTGGCAGTTTGATTGAATATGAATTTAGGGTAATGAATTTAGGCAAGCCACTGAAATCATATGGCACAGCCTCCATCAATATCCAGTGGCCTAAAGAAGGTGCTCTGGGGAAATGGCTTCTGTACCTGGTGAAGATCACCTCGAAAGGGCTGGAGCAGATCACCTGCTCACCAGAGAATGAGATCAACCCAAATGGCCTGATTGAAGGATCCACTTTCTCCAGAAGGAAGCGTCAGGTGGACCCAAGCAGGACATCTGAAGGGAGGAAAATATCTCTTTTCACagataaaagaaaatacaaaactcTGTCATGTGCTGGGGATGTGAAATGTGTGGACATCAAGTGCCCTCTACAGGGCCTGGACAGTAGTGCGCACATTGTACTGAGGTCTCGCCTTTGGAACACGACTTTCCTTGAAgatTATGCCTCATATAATTATCTCGACTTGATAGTGAAAGCCTCAATCAGTCTTGATGTTTCTGCTAAGAACATTGTGCTGAAGAATCCTGAGACACAGGTGAGATTGACTATCTTCCCTGAAAATACAGTGGCTCACTATGGTGGAGTGCCATGGTGGATAATTCTAGTGGCCGTACTAGCAGGAATACTGATGCTTGCTCTGCTAGTGCTTCTACTCTGGAAGTGTGGTTTCTTCAAGCGTGCCCAAAAAGAGCAATATGACGCAGCGTATCACAAAGCTGAGATCCATGCTCAGCCCTCAGACACAGACAAGCTCTCCACTGAGGCCTAGAGGCCTTCGCCTGGTGTGGATTTTTCAAACGTTCCAAGTATGATGACAGCATTCCTAAGTACCATGCTGTGAGGATCCGTAAGGAGACGCGCCACTTTACAGATGAAAGCATCATGTTTGATCCATTTGAGAAG

Function

symbol description
itga6a Acts upstream of or within skeletal muscle tissue development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including axial chorda mesoderm; hypodermis; retina; solid lens vesicle; and trunk. Human ortholog(s) of this gene implicated in junctional epidermolysis bullosa and junctional epidermolysis bullosa with pyloric atresia. Orthologous to human ITGA6 (integrin subunit alpha 6).
itga6 Enables insulin-like growth factor I binding activity and neuregulin binding activity. Involved in several processes, including nail development; positive regulation of cellular metabolic process; and skin morphogenesis. Acts upstream of or within positive regulation of apoptotic process. Located in cell surface and plasma membrane. Implicated in junctional epidermolysis bullosa and junctional epidermolysis bullosa with pyloric atresia.

NR:

description
PREDICTED: integrin alpha-6

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06485 ITGA6, CD49f; integrin alpha 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913150.2 True 4692 mRNA 0.44 25 17052057 17071808
XM_026913152.2 False 3433 mRNA 0.48 26 17053438 17071808

Neighbor

gene id symbol gene type direction distance location
tlk1a tlk1 coding downstream 26527 17002118 ~ 17025530 (-)
mylka LOC108266375,LOC108424386,LOC107559533 coding downstream 376790 16617571 ~ 16675267 (-)
fmnl2a fmnl2 coding downstream 437874 16562674 ~ 16614183 (-)
galnt13 galnt13 coding downstream 535770 16472059 ~ 16516287 (-)
kcnj3a kcnj3 coding downstream 594845 16429932 ~ 16457212 (-)
dlx1a dlx1,dlx1a,LOC107742982 coding upstream 23266 17095074 ~ 17097982 (-)
hat1 hat1,LOC106581768 coding upstream 58182 17129990 ~ 17148675 (-)
dync1i2a dync1i2 coding upstream 104873 17176681 ~ 17209898 (-)
ppp1r9ala LOC108266327 coding upstream 144913 17216721 ~ 17249832 (-)
cir1 cir1 coding upstream 365350 17437158 ~ 17443522 (-)
G83953 NA non-coding downstream 85884 16965511 ~ 16966173 (-)
G83614 NA non-coding downstream 642164 16409428 ~ 16409893 (-)
LOC117597324 NA non-coding downstream 823620 16224341 ~ 16228437 (-)
G83474 NA non-coding downstream 978986 16072840 ~ 16073071 (-)
G83473 NA non-coding downstream 979373 16072397 ~ 16072684 (-)
G84061 NA non-coding upstream 55502 17127310 ~ 17128680 (-)
G84177 NA non-coding upstream 235761 17307569 ~ 17311955 (-)
G84182 NA non-coding upstream 252237 17324045 ~ 17324878 (-)
G84189 LOC108266646 non-coding upstream 260684 17332492 ~ 17346350 (-)
G84227 NA non-coding upstream 319876 17391684 ~ 17391947 (-)
mettl8 mettl8 other downstream 12214 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 645579 16370227 ~ 16406478 (-)
G83554 NA other downstream 831191 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 975437 16043283 ~ 16076620 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 1078143 15943740 ~ 15973914 (-)
sp3a sp3 other upstream 300171 17371979 ~ 17381172 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 623482 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1841579 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 2371283 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 2496941 19568749 ~ 19586103 (-)

Expression


Co-expression Network