wipf1a (LOC108267026)


Basic Information

Item Value
gene id wipf1a
gene name LOC108267026
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17465688 ~ 17472291 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913155.1
CAATGGAACAGTGTTCACAACTGTGATACTTACTTCTCTACAACTTCAACCTCGGGTGAGTCCATCTTTTCCATGAATAGATTGAGGGGAAACTCAggagagaacagagaggaaAGGGAAGCTTTGGAGGACAGTGAGGGCATCCCTGCCTGTCAAAGgTAAagcgtgagtgagtgagcaaCACAGACTTAATATGCCTGGTCCTCCACCCCCACCAGCACCCCCTCCTCCAACCTTTGCTTTGgcgAATACTGAGAAACCATCCCTGTCCAGAACTGAGCAACATGGCAGAAATGCTTTACTCTCAGATATCAACAAAGGCACCCGCCTGAAAAAAACTGTCACCAATGACCGCAGTGCTCCAGTCCTTGATAAGCCCAAAGGGGGTGGGGCttctggtggaggtggtggtggtggtggtggtggtttagGAGGTGGAGCTCCAGGTGGACTTGGGGGGCTGTTCCAGGGTGGGATGCCAAGACTAAAATCTGCAGGAGGTGGCCCTGCAAGGCCACCCATGCCACCCACCAGTGGGAGATTCCCAGCACCAAGTGGAGGAGCGCCTCCTCGTCTCCCTGACACTCCTTCTGGGCGATCGAACATGAGCAGGGGCAGTGTTCCACCTGTGCCTTCCTCTACATCTGCCTCGTCACGCAGTCCAAATACTGGTGGCCCTCCACCTTTGCCAGGAGGTCGATTCCCAAGCTCCCCTTCTACACCACCAACACTGCCAGGAGGTCGATTCCCAAGTTCCCCTTCTACACCACCAACACTGCCAGGTCGGCGCCCCAGCACTCCTGCAAATCCTGCTCCCCCTGGCCGCCAAACATCTTTACCACCACCACCTGTTCCCTCTAGTGCCCGTCCATCTTCTAACACATTTTCCTCTGGATCCTCAAATGATtttccccctccaccaccaccagtAGGAGGAAACAGGTCATCGTTACTGCCACCTCCTGTTCCCTCTAGTGCCCGGCCACATTTTTCCACAGGCGACTCAGATGATTTTCCCCCTCCTCCACCATCCATAGGAGGACATGGGGCATCTTTTTCAGCACCTCCAGTTCCGCCTAGTAGCCACCCTCCACTTCCTACACCTCCTTCTGGATCAGATGAttttcctcctccaccaccacctgTAGGAGGAAGTAGAGCATCATTTTCTGGTAGTGGGTCTCCACTGCCACCACCACCCCCATCAGGAAGTAAACCAGGACCAAGATCTATGGGCGGTGCCCCACCACCACTCCCTTCAGGTAGAGGAGACCTGCCACCGCTACCCCCTACACCAGCAAAGGAGCCAACCAATACAACTCCTCATAGAAATTCTTTTAGTAACCCGCCACCTGTCCCACGACCTGGAGGGTCTGCCCCGCCACCACCTCCACCCAGTTCAAGACCTCCACCAGCAGGAAGATCCCCATCTATACGATCTAGTCCTCTTCCACCTCCCCCTGCAGGGGACAGCAGAGGAGGTACTCCACCTGCACCTCCTCCTAATCACCCTAGTGGTAGTCGAGGAGCTGGCAGACCTCCCCTTCCCCCAGATAGGCCTGGGGCAGGAGGGTTgcctcctccccctcccccttccATGGGCAATGGCAACCAGAGCTCACCTCAAAACAGCACAGATGAATGGGAGATGAGGTTTTCCTTCCATGCAGTTTCTGAGCTGCCCCCACCTGAGCCTTACATTTCCATCCCTAAGACCTACCCCAGCAAGGCTGGTAAGACTGATGGCAAAGCAGGGTCATTACCGAGGGAAAGAGGAGCTCCTCCACTGCCTCCAATACCCAGATAAACAAAAATCAGTCATGCCACTGCTGTATTACTATTCACTTCTTAAGCACAGCTTCAAATTTCTTTTTCTGAATGTTGCTGAGAGTTTTAAATTCcacatgtgagagagagtgtgtgaactttttttgagtatattacatttttaataaagacaaatTAGAACACAAACAGAGAttgaaataacattttatgttCTATTGTTATTGCTGAAAAGGCTAAAATAAAACACCTTTTATAAGACA
>XM_026913156.2
cacacacacacacacacacacacacttagtaaaaacatttactgattGGTTGGCTGCATCAGAGACAGGAAGTGCAATGGAACAGTGTTCACAACTGTGATACTTACTTCTCTACAACTTCAACCTCGGgTAAagcgtgagtgagtgagcaaCACAGACTTAATATGCCTGGTCCTCCACCCCCACCAGCACCCCCTCCTCCAACCTTTGCTTTGgcgAATACTGAGAAACCATCCCTGTCCAGAACTGAGCAACATGGCAGAAATGCTTTACTCTCAGATATCAACAAAGGCACCCGCCTGAAAAAAACTGTCACCAATGACCGCAGTGCTCCAGTCCTTGATAAGCCCAAAGGGGGTGGGGCttctggtggaggtggtggtggtggtggtggtggtttagGAGGTGGAGCTCCAGGTGGACTTGGGGGGCTGTTCCAGGGTGGGATGCCAAGACTAAAATCTGCAGGAGGTGGCCCTGCAAGGCCACCCATGCCACCCACCAGTGGGAGATTCCCAGCACCAAGTGGAGGAGCGCCTCCTCGTCTCCCTGACACTCCTTCTGGGCGATCGAACATGAGCAGGGGCAGTGTTCCACCTGTGCCTTCCTCTACATCTGCCTCGTCACGCAGTCCAAATACTGGTGGCCCTCCACCTTTGCCAGGAGGTCGATTCCCAAGCTCCCCTTCTACACCACCAACACTGCCAGGAGGTCGATTCCCAAGTTCCCCTTCTACACCACCAACACTGCCAGGTCGGCGCCCCAGCACTCCTGCAAATCCTGCTCCCCCTGGCCGCCAAACATCTTTACCACCACCACCTGTTCCCTCTAGTGCCCGTCCATCTTCTAACACATTTTCCTCTGGATCCTCAAATGATtttccccctccaccaccaccagtAGGAGGAAACAGGTCATCGTTACTGCCACCTCCTGTTCCCTCTAGTGCCCGGCCACATTTTTCCACAGGCGACTCAGATGATTTTCCCCCTCCTCCACCATCCATAGGAGGACATGGGGCATCTTTTTCAGCACCTCCAGTTCCGCCTAGTAGCCACCCTCCACTTCCTACACCTCCTTCTGGATCAGATGAttttcctcctccaccaccacctgTAGGAGGAAGTAGAGCATCATTTTCTGGTAGTGGGTCTCCACTGCCACCACCACCCCCATCAGGAAGTAAACCAGGACCAAGATCTATGGGCGGTGCCCCACCACCACTCCCTTCAGGTAGAGGAGACCTGCCACCGCTACCCCCTACACCAGCAAAGGAGCCAACCAATACAACTCCTCATAGAAATTCTTTTAGTAACCCGCCACCTGTCCCACGACCTGGAGGGTCTGCCCCGCCACCACCTCCACCCAGTTCAAGACCTCCACCAGCAGGAAGATCCCCATCTATACGATCTAGTCCTCTTCCACCTCCCCCTGCAGGGGACAGCAGAGGAGGTACTCCACCTGCACCTCCTCCTAATCACCCTAGTGGTAGTCGAGGAGCTGGCAGACCTCCCCTTCCCCCAGATAGGCCTGGGGCAGGAGGGTTgcctcctccccctcccccttccATGGGCAATGGCAACCAGAGCTCACCTCAAAACAGCACAGATGAATGGGAGATGAGGTTTTCCTTCCATGCAGTTTCTGAGCTGCCCCCACCTGAGCCTTACATTTCCATCCCTAAGACCTACCCCAGCAAGGCTGGTAAGACTGATGGCAAAGCAGGGTCATTACCGAGGGAAAGAGGAGCTCCTCCACTGCCTCCAATACCCAGATAAACAAAAATCAGTCATGCCACTGCTGTATTACTATTCACTTCTTAAGCACAGCTTCAAATTTCTTTTTCTGAATGTTGCTGAGAGTTTTAAATTCcacatgtgagagagagtgtgtgaactttttttgagtatattacatttttaataaagacaaatTAGAACACAAACAGAGAttgaaataacattttatgttCTATTGTTATTGCTGAAAAGGCTAAAATAAAACACCTTTTATAAGACA
>XM_026913157.1
CAATGGAACAGTGTTCACAACTGTGATACTTACTTCTCTACAACTTCAACCTCGGGTGAGTCCATCTTTTCCATGAATAGATTGAGGGGAAACTCAggagagaacagagaggaaAGGGAAGCTTTGGAGGACAGTGAGGGCATCCCTGCCTGTCAAAGgTAAagcgtgagtgagtgagcaaCACAGACTTAATATGCCTGGTCCTCCACCCCCACCAGCACCCCCTCCTCCAACCTTTGCTTTGgcgAATACTGAGAAACCATCCCTGTCCAGAACTGAGCAACATGGCAGAAATGCTTTACTCTCAGATATCAACAAAGGCACCCGCCTGAAAAAAACTGTCACCAATGACCGCAGTGCTCCAGTCCTTGATAAGCCCAAAGGGGGTGGGGCttctggtggaggtggtggtggtggtggtggtggtttagGAGGTGGAGCTCCAGGTGGACTTGGGGGGCTGTTCCAGGGTGGGATGCCAAGACTAAAATCTGCAGGAGGTGGCCCTGCAAGGCCACCCATGCCACCCACCAGTGGGAGATTCCCAGCACCAAGTGGAGGAGCGCCTCCTCGTCTCCCTGACACTCCTTCTGGGCGATCGAACATGAGCAGGGGCAGTGTTCCACCTGTGCCTTCCTCTACATCTGCCTCGTCACGCAGTCCAAATACTGGTGGCCCTCCACCTTTGCCAGGAGGTCGATTCCCAAGCTCCCCTTCTACACCACCAACACTGCCAGGAGGTCGATTCCCAAGTTCCCCTTCTACACCACCAACACTGCCAGGTCGGCGCCCCAGCACTCCTGCAAATCCTGCTCCCCCTGGCCGCCAAACATCTTTACCACCACCACCTGTTCCCTCTAGTGCCCGTCCATCTTCTAACACATTTTCCTCTGGATCCTCAAATGATtttccccctccaccaccaccagtAGGAGGAAACAGGTCATCGTTACTGCCACCTCCTGTTCCCTCTAGTGCCCGGCCACATTTTTCCACAGGCGACTCAGATGATTTTCCCCCTCCTCCACCATCCATAGGAGGACATGGGGCATCTTTTTCAGCACCTCCAGTTCCGCCTAGTAGCCACCCTCCACTTCCTACACCTCCTTCTGGATCAGATGAttttcctcctccaccaccacctgTAGGAGGAAGTAGAGCATCATTTTCTGGTAGTGGGTCTCCACTGCCACCACCACCCCCATCAGGAAGTAAACCAGGACCAAGATCTATGGGCGGTGCCCCACCACCACTCCCTTCAGGTAGAGGAGACCTGCCACCGCTACCCCCTACACCAGCAAAGGAGCCAACCAATACAACTCCTCATAGAAATTCTTTTAGTAACCCGCCACCTGTCCCACGACCTGGAGGGTCTGCCCCGCCACCACCTCCACCCAGTTCAAGACCTCCACCAGCAGGAAGATCCCCATCTATACGATCTAGTCCTCTTCCACCTCCCCCTGCAGGGGACAGCAGAGGAGGTACTCCACCTGCACCTCCTCCTAATCACCCTAGTGGTAGTCGAGGAGCTGGCAGACCTCCCCTTCCCCCAGATAGGCCTGGGGCAGGAGGGTTgcctcctccccctcccccttccATGGGCAATGGCAACCAGAGCTCACCTCAAAACAGCACAGATGAATGGGAGATGAGGTTTTCCTTCCATGCAGTTTCTGAGCTGCCCCCACCTGAGCCTTACATTTCCATCCCTAAGACCTACCCCAGCAAGGCTGGTAAGACTGATGGCAAAGGGTCATTACCGAGGGAAAGAGGAGCTCCTCCACTGCCTCCAATACCCAGATAAACAAAAATCAGTCATGCCACTGCTGTATTACTATTCACTTCTTAAGCACAGCTTCAAATTTCTTTTTCTGAATGTTGCTGAGAGTTTTAAATTCcacatgtgagagagagtgtgtgaactttttttgagtatattacatttttaataaagacaaatTAGAACACAAACAGAGAttgaaataacattttatgttCTATTGTTATTGCTGAAAAGGCTAAAATAAAACACCTTTTATAAGACA

Function

NR:

description
PREDICTED: WAS/WASL-interacting protein family member 1-like isoform X1

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K19475 WIPF; WAS/WASL-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913155.1 True 2048 mRNA 0.52 8 17465688 17472217
XM_026913156.2 False 2019 mRNA 0.52 8 17465688 17472291
XM_026913157.1 False 2045 mRNA 0.52 8 17465688 17472217

Neighbor

gene id symbol gene type direction distance location
gpr155a gpr155 coding downstream 1412 17449880 ~ 17464276 (-)
cir1 cir1 coding downstream 22166 17437158 ~ 17443522 (-)
ppp1r9ala LOC108266327 coding downstream 215856 17216721 ~ 17249832 (-)
dync1i2a dync1i2 coding downstream 255790 17176681 ~ 17209898 (-)
hat1 hat1,LOC106581768 coding downstream 317013 17129990 ~ 17148675 (-)
LOC113547453 chrna1,LOC108266097 coding upstream 824 17473115 ~ 17482009 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC106590032 coding upstream 13757 17486048 ~ 17523051 (-)
atf2 atf2,LOC107739459,LOC107671311,LOC107657392,LOC107742976 coding upstream 57646 17529937 ~ 17556165 (-)
atp5mc3a atp5g3,LOC108266717,LOC108424356,LOC103027531,LOC105908030 coding upstream 84528 17556819 ~ 17560073 (-)
lnpa lnpk coding upstream 195275 17667566 ~ 17679161 (-)
LOC117597450 NA non-coding downstream 34257 17407218 ~ 17431431 (-)
G84227 NA non-coding downstream 73741 17391684 ~ 17391947 (-)
G84189 LOC108266646 non-coding downstream 119338 17332492 ~ 17346350 (-)
G84182 NA non-coding downstream 140810 17324045 ~ 17324878 (-)
G84177 NA non-coding downstream 153733 17307569 ~ 17311955 (-)
G84394 NA non-coding upstream 254362 17726653 ~ 17727997 (-)
LOC117597384 NA non-coding upstream 268346 17740637 ~ 17744025 (-)
G84411 NA non-coding upstream 361084 17833375 ~ 17833589 (-)
G84881 NA non-coding upstream 659119 18131410 ~ 18131998 (-)
G84880 ino80d,LOC106582458 non-coding upstream 661111 18133402 ~ 18133689 (-)
sp3a sp3 other downstream 84516 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 425845 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1059210 16370227 ~ 16406478 (-)
G83554 NA other downstream 1244822 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 1389068 16043283 ~ 16076620 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 222999 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1441096 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1970800 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 2096458 19568749 ~ 19586103 (-)
G85848 NA other upstream 2754437 20226728 ~ 20237615 (-)

Expression


Co-expression Network