LOC113526302 (LOC108266276)


Basic Information

Item Value
gene id LOC113526302
gene name LOC108266276
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18082115 ~ 18084871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913233.2
TGGAACATCCCTGTTAAGCGCTGTGGGGGGTTTAATACTGTGACCACCCCCCTTAATCAAACTGAGGTTGTAACGCAGGTTCACAAACAAATCCTGTCAGTTTACCGTGACATCTCAAAGATGATGGATGACGTGGTCCTGCGCGCGCGTCTGGTCCTGTTGCTGCTCGTGTTGGTGCACGCGCTTTCAACGCAGGACCAAAGCTTGGGTCACGTGGACCCGTTAACGCTGAGCCGCGCGGACCCGCGCTGCTGGGAGAGCGCTTCTGTACTGCTGCTGGAGATGCGCACGCCGCGAATCGCGCACACCGTGCCTGACTTCTGGGACCTCATGGTGTTTCTGAAGTCCTCGGACAACCGGAAGCACGGCGCTCTGTTCTGGGACCTGGCCCAAGTCTTCTGGGACCTCTACGTGGACTGCATCCGGTCCCGAAACCATGGGCTCGGGAGGCGGCATATCATGCGGACAAAAAGGCGTCTCACGGTCGCGCGCGCTCTCTCCGCGGACAAGTCTTTTGTGCAAGAGTCGCAGAACCATTTTTCGAAGTTAAAGGAGTTTACTCGGGCCTGGTTTCAAATCCAGGTGCAGCAGGATGGACCACACAGCTTGCACAGTGATGCTTATCCAAAAACCCAGGCTTCAAagaaaatttcacatttttaatcatgaagaaaaatgaagataaaatatttttacctATGGcaacttttttcctgtttaataaaataat

Function

NR:

description
PREDICTED: uncharacterized protein LOC108266276

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913233.2 True 730 mRNA 0.52 3 18082115 18084871

Neighbor

gene id symbol gene type direction distance location
casp10 NA coding downstream 5793 18068228 ~ 18076322 (-)
prkra prkra coding downstream 19846 18054788 ~ 18062269 (-)
pde11a pde11a,LOC107671328,LOC107657382 coding downstream 90604 17937053 ~ 17991511 (-)
nfe2l2a nfe2l2,LOC107579917 coding downstream 185182 17881771 ~ 17896933 (-)
lnpa lnpk coding downstream 402954 17667566 ~ 17679161 (-)
LOC113525937 adam23,LOC108267022,LOC108424345 coding upstream 3752 18088623 ~ 18114405 (-)
stk24a stk24 coding upstream 61535 18146406 ~ 18161642 (-)
slc15a1a slc15a1,LOC108239716,LOC101165016 coding upstream 78309 18163180 ~ 18174048 (-)
zmp:0000001200 dock9 coding upstream 90125 18174996 ~ 18258225 (-)
LOC113526154 farp1 coding upstream 176364 18261235 ~ 18313731 (-)
G84411 NA non-coding downstream 248526 17833375 ~ 17833589 (-)
LOC117597384 NA non-coding downstream 338090 17740637 ~ 17744025 (-)
G84394 NA non-coding downstream 354118 17726653 ~ 17727997 (-)
LOC117597450 NA non-coding downstream 650684 17407218 ~ 17431431 (-)
G84227 NA non-coding downstream 690168 17391684 ~ 17391947 (-)
G84881 NA non-coding upstream 46539 18131410 ~ 18131998 (-)
G84880 ino80d,LOC106582458 non-coding upstream 48531 18133402 ~ 18133689 (-)
G84882 LOC108266575 non-coding upstream 49965 18134836 ~ 18135614 (-)
G84883 LOC108266575,LOC108424342 non-coding upstream 50798 18135669 ~ 18137083 (-)
G84975 xirp2 non-coding upstream 455482 18540353 ~ 18555865 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 382135 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 700943 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 1042272 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1675637 16370227 ~ 16406478 (-)
G83554 NA other downstream 1861249 16219964 ~ 16220866 (-)
LOC113526313 baz2b other upstream 828516 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1358220 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 1483878 19568749 ~ 19586103 (-)
G85848 NA other upstream 2141857 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 2309600 20394471 ~ 20423244 (-)

Expression


Co-expression Network