LOC113540058 (LOC108266598,LOC108413855,LOC101471943,LOC107700103,LOC100693874)


Basic Information

Item Value
gene id LOC113540058
gene name LOC108266598,LOC108413855,LOC101471943,LOC107700103,LOC100693874
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2481594 ~ 2522385 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936246.2
CCCTCGCCGGGGATATATAAATGCGAGACAGTAACTTCTCacctgttctcacacacacacacacacacacacacacatagtgtatCCGGGTGATATCATGGCGGATGATCCGCTGGTTGGGGCAGTGGACCAGGGGACCAGCTCCACAAGGTTtctggtGTTCAATGCTAAAACTGCTGAGCTTGTCAGTCAGCATCAGGTGGAAATTACACAGAGTTTCCCCAAAGAAGGATGGGTGGAAGAAGATCCCAAGGAGATCCTACAgtctgtgtatgagtgtatggaGAGGACCAGTGAGAAACTCGCTCAGCTCAATATTGACATCACCACcattaaagCCATTGgagtgaccaatcagagagagaCGACATTGGTGTGGGACAAAGAGACTGGAGAACCTCTCTACAACGCCATTGTGTGGCTGGACTTGAGGACTCAGTCCactgttgaacatctcattgaGAAAACACCTGGAAAGAACAAAAACCACTTAAAGCATAAGACAGGTTTGCCCATCAGTACCTACTTCAGTGCGGTGAAGTTGCGCTGGTTGATGGACAATGTGGTGGAGGTGGATGAGGCTGTGCGCTCTCACCGTGCCATGTTTGGAACCGTTGACTCCTGGCTTATATGGAGTTTAACTGGAGGGAAAAATGGTGGTGTTCACTGCACAGACGTCACCAACGCCAGCCGCACAATGCTGTTCAACATACACACCATGGAGTGGGACCTGGATCTGtgcagGTACTTTGATGTTCCTGCTGAAATCCTTCCGGAGGTTAGAAGCTCTTCAGAAATATATGGTTACACGAGCTCAGGTTCACTGGTGGGTGTGCCCATCTCTGGATGTCTGGGCGATCAGTCGGCTGCTCTTGTGGGACAGATGTGCTTCAAAGATGGTCAGGCCAAAAACACATATGGAACCGGTTGCTTCATGTTGAAAAATACTGGCATCAAGCCTGTGATGTCAGAACACGGCCTCCTCACAACAATTGCCTACAAACTGGGAAAGGACAGACCTGCTCACTATGCACTCGAGGGATCCGTTGCAATTGCTGGAGCAGTAGTGAGGTGGCTAAAGGACAATCTGGGAATCCTCAAATCCTCTTCTGAAATTGAAAAGTTGGCTGCTGCAGCTGGGACATCTTATGGCTGTTATTTTGTTCCAGCATTTTCTGGGCTTTATGCTCCCTACTGGGAACCCAGTGCTCGAGGGATTATCTGTGGCCTGACACAGTTCACAAATAGGAGTCACTTGGCTTTTGCAGCACTGGAAGCAGTGTGCTTTCAAACGCGAGAGGTTTTGGATGCGATGAATCGAGACAGTGGCGCTTCGCTTACTCAGTTACAGGTAGATGGAGGAATGACGGCTAACAAATTACTAATGCAACTACAGGCTGATATCCTCTGTATCCCTgttgTGAGACCCTCTATGTCTGAGACTACTGCACTGGGGGCAGCAATGGCTGCCGGAGCAGCTGAAGGGGTCAATGTGTGGAGCCTAAATCCTGAGGACATGACCTGTGTAACCTCTGAGAAATACCAACCTCAAATCAAACCAGAAGAGAGTGAATTTCGATACGCAAGATGGAAGAAAGCCGTCCAGAAAGCCATGAACTGGGAGACTATGGATCCACTTTCTAACGAGAATGgTTATCAGAACTAGATGTATGAAacactgctgctcactgaaaaATCGTGCATTCAGGCTGAAGAGATTTGTGCAGTGGTGCTCACCATAACTAGCGAAGTGCATTTATTCTTGGGTGCTTGATTAAGTAAGTGTGTAGCTTCAAGTGTACATGAGCCAGAGTCTGATTGTACGTTGTCTCCTTTTTGTTCTGATACAAGTAGCCCCAGCTCTCCTCaagaaattacattaaaatgtgtttcattCCATGCTGACATTCTGTGGTCAGGCTGCTAAAATGCCCTGAGTGCAAATTATAGTTGCCTCAGCACAATTTTTGAATGTGTGTTCATTTGTCATTAACAAGAAGCAGAATGAAAAGAGAATGATCCAGTAGCCTACAAGAAGAAATGACTATTTTTTGTcaacctgctttttttttaaataagaaatttcAATTGAGAATTCCAACAATTTTCTTAAATCAATGATTTGGTCATTCTATGCATtgattctgtttgttttctacTTCCCacctttttctttattacaaCATATGCTTTTTGACAAACTGGTTTGAAATTCACAGTACGATAATGACACAAGAAGTCCATCTTTAATTAGTGAATAATTTAACTAATTACCACTTTGAAATTCAGTATGTTTGAGCAAAAATCTAAACATCAAAATGGAGTAAAGCATTAACCTTGAACAGACTGACAGTATTTCTGGATGTGATGTGTGAGTGGATGTTGGAATGGATGTAATGAATGAGTATAGTTTGACGAGCTGTACAactttgttattaatattattggtattattgttattaatgtaGTTACATTGAtgcaattaataatttattgattttattttgatttatttgttaacTTGTTTATTTAGGaaaaggatgtaaaaaaaattagaaacaatgaaaaacactATTCTAAAATTCTTTACAATTGTTTTCTGAAAGTTTGTAACGTAAAGAATAAATCCCTGTGCTGGACCCGCATCCCACACAAGGTGAATTCCAGACATATTCCtggtgttcccaggataggctccagacctTCTGGTCTTAAAGCagtaactgaatgaatgaatgtaaagattaaatgtatttttctgttgAA
>XM_034304201.1
AGCCCTCGCCGGGGATATATAAATGCGAGACAGTAACTTCTCacctgttctcacacacacacacacacacacacacacatagtgtatCCGGGTGATATCATGGCGGATGATCCGCTGGTTGGGGCAGTGGACCAGGGGACCAGCTCCACAAGGTTtctggtGTTCAATGCTAAAACTGCTGAGCTTGTCAGTCAGCATCAGGTGGAAATTACACAGAGTTTCCCCAAAGAAGGATGGGTGGAAGAAGATCCCAAGGAGATCCTACAgtctgtgtatgagtgtatggaGAGGACCAGTGAGAAACTCGCTCAGCTCAATATTGACATCACCACcattaaagCCATTGgagtgaccaatcagagagagaCGACATTGGTGTGGGACAAAGAGACTGGAGAACCTCTCTACAACGCCATTGTGTGGCTGGACTTGAGGACTCAGTCCactgttgaacatctcattgaGAAAACACCTGGAAAGAACAAAAACCACTTAAAGCATAAGACAGGTTTGCCCATCAGTACCTACTTCAGTGCGGTGAAGTTGCGCTGGTTGATGGACAATGTGGTGGAGGTGGATGAGGCTGTGCGCTCTCACCGTGCCATGTTTGGAACCGTTGACTCCTGGCTTATATGGAGTTTAACTGGAGGGAAAAATGGTGGTGTTCACTGCACAGACGTCACCAACGCCAGCCGCACAATGCTGTTCAACATACACACCATGGAGTGGGACCTGGATCTGtgcagGTACTTTGATGTTCCTGCTGAAATCCTTCCGGAGGTTAGAAGCTCTTCAGAAATATATGGTTACACGAGCTCAGGTTCACTGGTGGGTGTGCCCATCTCTGGATGTCTGGGCGATCAGTCGGCTGCTCTTGTGGGACAGATGTGCTTCAAAGATGGTCAGGCCAAAAACACATATGGAACCGGTTGCTTCATGTTGAAAAATACTGGCATCAAGCCTGTGATGTCAGAACACGGCCTCCTCACAACAATTGCCTACAAACTGGGAAAGGACAGACCTGCTCACTATGCACTCGAGGGATCCGTTGCAATTGCTGGAGCAGTAGTGAGGTGGCTAAAGGACAATCTGGGAATCCTCAAATCCTCTTCTGAAATTGAAAAGTTGGCTGCTGCAGCTGGGACATCTTATGGCTGTTATTTTGTTCCAGCATTTTCTGGGCTTTATGCTCCCTACTGGGAACCCAGTGCTCGAGGGATTATCTGTGGCCTGACACAGTTCACAAATAGGAGTCACTTGGCTTTTGCAGCACTGGAAGCAGTGTGCTTTCAAACGCGAGAGGTTTTGGATGCGATGAATCGAGACAGTGGCGCTTCGCTTACTCAGTTACAGGTAGATGGAGGAATGACGGCTAACAAATTACTAATGCAACTACAGGCTGATATCCTCTGTATCCCTgttgTGAGACCCTCTATGTCTGAGACTACTGCACTGGGGGCAGCAATGGCTGCCGGAGCAGCTGAAGGGGTCAATGTGTGGAGCCTAAATCCTGAGGACATGACCTGTGTAACCTCTGAGAAATACCAACCTCAAATCAAACCAGAAGAGAGTGAATTTCGATACGCAAGATGGAAGAAAGCCGTCCAGAAAGCCATGAACTGGGAGACTATGGATCCACTTTCTAACGAGAATGGtgaaaactcacacacacacacacacacacacacacacacacacacacacacacgttgttaAATGGACAACACATTGGCCCAAGCGTTCGCAAATTTCACatatagtttctttatttatcaatctttaGCATATCCGTATGATCAAACTCACGTCTGGTtggtgtggctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtaaatttgagcATACCATTTTAACAACCTGAAAAATGTGCAGTTAAATCAGCAAAATCAATATCATCAAAACTTACAGCAAGTATAGcaattgtgaaataaataataaaaaagcatatAACACTGATTGAGTAATACAGGCTCATTTGCATACAGGAAGTATGACAAAGCTCTCACCTTGGTGCACAATCTTGATGTCAGCCCCTGTTTTTGACCTTATTACATAATTTCATATTAGTATTAAATCAGTGCTATTTTATTCTTTGCAGTATTCTGCTTATTTagcatttgagttttttttcttcatatgaAAGAAGGCTGTTCACTGgctcaaaaaaacaacaacctaaGAACACGTCCCCATTTGTCTATGTATGTCTCAATGATAGCATTAATTGTCAGCTAAATTAAATGCAACATTGATGAATAAGGGCCAATGATATGGTCATCAGTTTATCATGGTCTCCTCACATTTACAAAGAAGATACAACTAAATGCCATATAACACTGCAGGTGGCAGTGCAAAATTTATCATTCACTTTATCATTAACAGTACAGAGTATATTAGTTTTCTGTATCAGTATAATACTCAGTGTAACCTCACACCTTTAATCCATTTTACCTTTAATCCATTTCAATGGTAATGTAAATTTCAGACTGATCAATTTATTACTGAGTTCAGCTTTATTAGCGACTCCACttaattttattgattaaaCTGCCGTAGAATGGAATTGACACGTTTGAGCCTTGAATGAATAGACAATGGGAATGTGAGTATGTAAATATTGCCTTGTTAAATTAAAAGctggttatttgatttattgGTAGCAAACAGCTGGCTTGTTTTTACATCATACATCAATTTTATCCAAGCAATTTAATTCTCCAGTAAATTATAATTCTCAATTCTGTTATGCCAGAAGACTTTCCATTACTCCCACAATTCCTgaacccttaggacaaaataaagaagataaattaatttatagcTTCAGTGTGTTTGGTCTTGCAGATATTTCTTCGATATACATATCAGAAATACAAAcatgttaatttaattaatgaaaaacaaaatcattttttagtAAGTCAGGGAGACTGAGAGGGTCATGTCAAACTTAGTTTTACActattttctgttgattttgccCTTGGATATACCcgtattttttacattttatttttacttgtagATAAAttgaaaattacatttttccacCCAGGGGATGGACACTTTTGCGCTCAGCTGTTTTGTCTGCTTATTACAGACTTCTAGGCCTGATGTATTAAGATCCAAAATAATGAGCACTAATTTGCATGTGCAAAAAGTTTTGAGTATTCACAAAAAATAATTGCAGGAATTATGTCATGTGAAAAattaggtttttgtgtgtgcggTTTGTTCTTGATAGCTGCAGCAAGTTCAGATCTCTAAGGGATTCCTGGACGAGTCAAACTGAAACAGTACAAGCACGTAACTGGCTATAATGCCAATTAAAGGCTGAGACGCATCAAAAAACAGTTCAAAACATAATATGAATGCAAAATAAGAGTCCATGTTCTGTTTACCACTGGTTTTTAACTTCATTTTGAGATACAAATATATAATCCTCACTGTCCTTTCTTTATTAAAACttaataaatagtttaattttGTCATCAACTGGCA

Function

NR:

description
PREDICTED: glycerol kinase-like

GO:

id name namespace
GO:0006072 glycerol-3-phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0004370 glycerol kinase activity molecular_function

KEGG:

id description
K00864 glpK, GK; glycerol kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936246.2 False 2766 mRNA 0.43 19 2481594 2522383
XM_034304201.1 True 3523 mRNA 0.41 19 2483030 2522385

Neighbor

gene id symbol gene type direction distance location
LOC113540088 LOC108191725,LOC101885398,LOC107661227 coding downstream 234974 2234810 ~ 2246620 (-)
LOC113546994 LOC108261078 coding downstream 401181 2069547 ~ 2080413 (-)
lims2 LOC108261084,LOC108440488,LOC105898085 coding downstream 483521 1988540 ~ 1998073 (-)
ranbp2 LOC108261082,LOC108440489 coding downstream 495555 1950132 ~ 1986039 (-)
cops8 cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920 coding downstream 610101 1858262 ~ 1871493 (-)
il1rl1 NA coding upstream 144471 2666856 ~ 2680900 (-)
LOC113545737 NA coding upstream 181975 2704360 ~ 2712278 (-)
LOC113545730 LOC108266839 coding upstream 191627 2714012 ~ 2732151 (-)
crfb4 LOC108266840 coding upstream 211799 2734184 ~ 2743220 (-)
LOC113541336 LOC108266841 coding upstream 222951 2745336 ~ 2760206 (-)
G76093 NA non-coding downstream 30645 2449719 ~ 2450949 (-)
G76060 NA non-coding downstream 180654 2300721 ~ 2300940 (-)
G76057 NA non-coding downstream 206955 2271867 ~ 2274639 (-)
G76013 NA non-coding downstream 366995 2114190 ~ 2114599 (-)
G75947 NA non-coding downstream 535418 1945973 ~ 1946176 (-)
G76333 NA non-coding upstream 8269 2530654 ~ 2530992 (-)
G76325 mink1,LOC108427066 non-coding upstream 34121 2556506 ~ 2559152 (-)
LOC117597440 NA non-coding upstream 370991 2893376 ~ 2897204 (-)
G76400 stk17b non-coding upstream 392015 2914400 ~ 2917047 (-)
G76455 NA non-coding upstream 413696 2936081 ~ 2936563 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 417296 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 677949 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 807021 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 807409 1674112 ~ 1674185 (-)
trnar-ucu_6 NA other downstream 818985 1662520 ~ 1662609 (-)
ifngr2 NA other upstream 162123 2684508 ~ 2753806 (-)
LOC113541352 c6h21orf62 other upstream 278621 2801006 ~ 2805863 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 1264571 3786956 ~ 3816059 (-)
G77283 NA other upstream 2317575 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2809199 5331584 ~ 5339633 (-)

Expression


Co-expression Network