LOC113540598


Basic Information

Item Value
gene id LOC113540598
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2760250 ~ 2772389 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937180.2
ACCCTTATTAGAAGTTTCCGAGAAATGTGCTGGTTTCTCACAGTTTCCTCTAACGGTTCGGATGTGAGACAGCAGGTCGGTGATGGTTATCAGAGGTGTGCTAATGGACTGCTGAGAGCTAGTTTCATTTGCTCTGTGTAACTCGAGGCTGTAAGCTGCAGTTAGATGGAAGTCATGGTAacgttctttgtttttttatcacTTGAGCAAAAGCGGATGCGGTGAGCAGCTGGTTAGCTTCAGCGCTAAAGCTAATAAAGCTGGCAGTATGGCGCTGTTATTGTCCTGAACTTGTGCTGTGGTCTGGAAGAAGCGAAATGAGGGTAAAGCGTCTGTAAGTGTCCAGGCAGCGGTCAGTGTCTCAGCCCTCAGCTGCTATGGATCATGTTTCCACTCTGCTGATGCTGATTGCACCATGCTCAGTGTTGTGCGGTCACGTCCCTGCCCCGGTCAACCTCACGATGGAGTCCCACCACTTCATTCACCTGCTTAGTTGGCAGGCTGGACCAGGGTCTCCTGCAGGACTGAATTACACAGTCATCTTCCGCTCCTATAGtGAGGGCTGGAAGATGGTGGACCGTTGTGAAGCAGTGCGTGATCCATTGCGCTGTAACCTAACAGATGTTTTCTCCGATCTGGAAAAGACCTACTACATCAATGTTACAGCTGTCTCAGGGAATGAGACGTCCAAACCTCGTTCCTACAGTCTGTTTACGCCAGTCTCTGACACTGAGCCAGAGCTTCCGTCTCTGCGAGTTTCAGCGTGTAATGActccctgtgtgtgtatcttcaGTCTCCGTCCGAGAGACTTGAGGCGGTTTATAAGAAATTCCCATACACGCTTAATGTGACCAACGAAAAAGGAGTTCAGttcTTACAGAACACCATTGGGTTGAAGACTGTAGATCTGAAAGTGGTGCCGGGGCTGCAgtattgtgtgtctgtgagcatCAGAAATCGAAGTACTGCTAATAAACCATCCGTGTGTGCTTCTAAACCTGCAGCAGTGAACAACATGGATGCCGTgatctctgtgtttttgtgtctgcTGGCGCTGGTGACTGTGATGATTGTTGGTCTGCTGCTTCTTAAAAGGTCCATGAAAATCCATCAGCCATTAGTCCTGAGTTCATTTAAGCCGCCATATAAAGTGGTGCTTCTTCGTTGGCCCACTGTGGAGTTTGTAAAGTGCGTTTCACTGGAGCCCAACATATACAAAGATGTTCAGGTCAGTGAAGAGGTGGACCGAGAGAAAGAGGATGAAGAGGTGGCATATGAGGGACGAAGGGGTTGTGAAGAAATTTCAGAAGAATCAAGGTCTTCTCTTCCAAGTTCCCCAGAGAGCCAGTATGAGCACCCCTGTAATCCggacactaaaacacacacacatgtccctGGAACCTTTTTGAAAGAGCACACAGCACCAGACAAGATCACACGTCACTGGGAGGCAACAACTCCCCAAACTACAAGTCAGACCCTCACAGCACACCTCTTACCCCTAAAAACACCAATCCAAGAGCTCAAAAAGAATGATTTGGCCTTGCTCAGGCATAAGAGAGGAGATGAACTcagacaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggtggaggaggaggaggaggaggaggacagtGACAATGTGAATTTCTTCTCTTTGATCCTGGGAGGCCAAAATTCAGAACAACAGGAAGAGAAgatggaaaatgtaaaaaaagttCAACCAGAGGTGCCTTTATTTGTGTTACAGCCACCAAAACCTGCCATGGACATTCAGCCCACATATACTGAGAACACAACCAAACGCATTTCATACtctgaggaggaagaagaggaggatatggaggaggaggaagctTTCTCCGGATATATGATACGGAGTTAGAAACCGTGTTTTCTATAAAACAGAATTTTCTCCATCCATTATGTAAATGAGCTAATGAGCAGTTCGTATAAGAAAACATCtctttaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatat

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0004904 interferon receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937180.2 True 2030 mRNA 0.47 7 2760250 2772389

Neighbor

gene id symbol gene type direction distance location
LOC113541336 LOC108266841 coding downstream 44 2745336 ~ 2760206 (-)
crfb4 LOC108266840 coding downstream 17030 2734184 ~ 2743220 (-)
LOC113545730 LOC108266839 coding downstream 28099 2714012 ~ 2732151 (-)
LOC113545737 NA coding downstream 47972 2704360 ~ 2712278 (-)
il1rl1 NA coding downstream 79350 2666856 ~ 2680900 (-)
crfb1 NA coding upstream 3451 2775840 ~ 2799002 (-)
tyw5 tyw5,LOC107725219,LOC107728297 coding upstream 51427 2823816 ~ 2829821 (-)
c5h2orf69 c6h2orf69 coding upstream 146917 2919306 ~ 2920007 (-)
nabp1a nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000 coding upstream 156432 2928821 ~ 2953801 (-)
trnas-cga NA coding upstream 166932 2939321 ~ 2939402 (-)
G76325 mink1,LOC108427066 non-coding downstream 201098 2556506 ~ 2559152 (-)
G76333 NA non-coding downstream 229258 2530654 ~ 2530992 (-)
G76093 NA non-coding downstream 309301 2449719 ~ 2450949 (-)
G76060 NA non-coding downstream 459310 2300721 ~ 2300940 (-)
G76057 NA non-coding downstream 485611 2271867 ~ 2274639 (-)
LOC117597440 NA non-coding upstream 120987 2893376 ~ 2897204 (-)
G76400 stk17b non-coding upstream 142011 2914400 ~ 2917047 (-)
G76455 NA non-coding upstream 163692 2936081 ~ 2936563 (-)
G76462 NA non-coding upstream 192877 2965266 ~ 2966533 (-)
G76570 NA non-coding upstream 820429 3592818 ~ 3595411 (-)
ifngr2 NA other downstream 6444 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 695952 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 956605 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 1085677 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 1086065 1674112 ~ 1674185 (-)
LOC113541352 c6h21orf62 other upstream 28617 2801006 ~ 2805863 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 1014567 3786956 ~ 3816059 (-)
G77283 NA other upstream 2067571 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2559195 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 3466566 6238955 ~ 6253346 (-)

Expression


Co-expression Network