LOC113541352 (c6h21orf62)


Basic Information

Item Value
gene id LOC113541352
gene name c6h21orf62
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2801006 ~ 2805863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938287.2
TGGTGTCTAAGCCACAGTGAGTCAACATTCATTGCCAATGAGACTGTGTGAGGGGCCTCGGGAAGgggagacagagggaggagagatggaaaagaggggaaggagagaggaagaaagggaGAGTGAATAAGAGAGCTGAAGCATGAAGCAGCCACGATTGTAAAGTCCTCAAGACTCAACAGctaatggaaaaaatattactGATGGGATTCAGTGTTATGTGAGCAGTTCACAGCAGACGCTTCATCAGTGAAGCTAATGTAAACTGGACTCCGGATCAGGATGTAGGCCTGGCATGGATGCCAAAATGCTGCTGTCTTGCTTATGGCACATCTTGTGTGTCTTCCTCCCATTAAACTTTGTGGAAACTCAGCATCCCCTCCAAGCCAACATCACACTAGTGTTCGACAGCTCGGACCATACTGACCGCTTATGCAGCTGCAGCTGTGCGACGGCGGTGCGCAGTTGTGATGAAGCTCTTGCCAATCTGATGTGCAGCTGTGGCACCGTGTGGCGCTCGGCTCTGTCGCCTGGCACCCTGGAGGCGGAGACGCTGACGGTGTGGGCGTGGCAGCCCTGGGTGCTGAGGGAGCTGCTGAACGGCAGCAGGGTTCCAGAGCTGCAGCTGTCTCTGTGTAGCCCTGCCTCATTTCTCGGACCCTCTCAATATCTCACTATTGTGGGTCTGAGGAAGCTTCAGATCTCCAATAATGGGGTGCCATATCACAAGAGCGAAAAAGTCCTGAACTTCGGACTGAACGTGCCGGATGGGAATCTCAGCGTTGCATTTTTAGACCTGTGGTCACTGAACAATCACTTGAAGGCCTACAGTGTCATTGGACCACCGCTGCAGATGCTTATGCAGCATTTTCCTTACCTTCAGCAAGCCAATATAAAGATTACTGACCTAGAAGAGATCCACAAGCCATCCATCTTaacttttatttactaaattGAGGCTCTAAACAGAGCCTCTACAGCCAATCAGGTTTTCTTATGCTGAAGAACATGGAGAAAGAGCTTCTATCTACACTGGACTAACAATATAATTATAACTGTCCAACCATGCCCTACACCTTATTCCCTACAAATccactgcagtgcattgtgggactTCATAAGTGCACTTGATATTTCTTCACTTGTTTCCTCAGGCATAGCTACAAAACAGAACCCAAGCCCCCCAATACACTGCACCTATTAGTGAACAGTGTGCAGTTTCAGACATGTGAGACTATTGCAAAGGAACATTTCCTCCAGTTTCTACCAAACCGcaacaacagaaaaagaaataggCAAGAAGGCACTCAGAATCACTTCCTTTTTCCTTTGAGGCTGTACATTCAGATAAACAACATTTGTGGCATTTTTCTGGCACCAGTTAACTTCTGAAACTTTTTTGCCATTAagctttaaatttattattttttttaaacatttttgtggaatcaattccatttttaaaattttttttttaaaattcagttcaGGTCCTGGAGTTCTCATAACCAGAACTGCTTCCTTATTTTCTCGGATTGAACCAGATGTATAAATTCTTTTGAACTGCAGCTGTAAGACATTTTGTAGAATATTTATTCCTGTGTGTCATGATAGATATATTAACGTACTAGCATTGCAATGTTTAGCGATcagtaaaacataaaacattaattgCACCTTATCATTCTAAAACTTGTCCTCTAATACTACTAGCACTACTAGCacttaaataaatcaacaaaaaatTGTATATGAAGAtgtctgaatgaaaatattaaaaatagctTTCAAAGTCCAGgctttaaataaaaaggaattttATAGAGAATTGTGCTTGGCATTGCAACATAGTGCATATCCGGTGACGAATATTGCTCAGAGTATTATTGTTAGCATGTCTGGATGTAAATAGAGAAGACTGATGTACAAAATTGGCACATAAATTgaacactattattattattattattattattactattattattattattataactgaatataatgagaaaatattctgtaaatCTTTGAAGCATATGCTGAGTAACTGACTAAAGGCCTAACTACAGGCTtgaataaatgtcaaataaatgtc
>XM_026938295.2
GTGGTGTCTAAGCCACAGTGAGTCAACATTCATTGCCAATGAGACTGTGTGAGGGGCCTCGGGAAGgggagacagagggaggagagatggaaaagaggggaaggagagaggaagaaagggaGAGTGAATAAGAGAGCTGAAGCATGAAGCAGCCACGATTGTAAAGTCCTCAAGACTCAACAGctaatggaaaaaatattactGATGTGTTATGTGAGCAGTTCACAGCAGACGCTTCATCAGTGAAGCTAATGTAAACTGGACTCCGGATCAGGATGTAGGCCTGGCATGGATGCCAAAATGCTGCTGTCTTGCTTATGGCACATCTTGTGTGTCTTCCTCCCATTAAACTTTGTGGAAACTCAGCATCCCCTCCAAGCCAACATCACACTAGTGTTCGACAGCTCGGACCATACTGACCGCTTATGCAGCTGCAGCTGTGCGACGGCGGTGCGCAGTTGTGATGAAGCTCTTGCCAATCTGATGTGCAGCTGTGGCACCGTGTGGCGCTCGGCTCTGTCGCCTGGCACCCTGGAGGCGGAGACGCTGACGGTGTGGGCGTGGCAGCCCTGGGTGCTGAGGGAGCTGCTGAACGGCAGCAGGGTTCCAGAGCTGCAGCTGTCTCTGTGTAGCCCTGCCTCATTTCTCGGACCCTCTCAATATCTCACTATTGTGGGTCTGAGGAAGCTTCAGATCTCCAATAATGGGGTGCCATATCACAAGAGCGAAAAAGTCCTGAACTTCGGACTGAACGTGCCGGATGGGAATCTCAGCGTTGCATTTTTAGACCTGTGGTCACTGAACAATCACTTGAAGGCCTACAGTGTCATTGGACCACCGCTGCAGATGCTTATGCAGCATTTTCCTTACCTTCAGCAAGCCAATATAAAGATTACTGACCTAGAAGAGATCCACAAGCCATCCATCTTaacttttatttactaaattGAGGCTCTAAACAGAGCCTCTACAGCCAATCAGGTTTTCTTATGCTGAAGAACATGGAGAAAGAGCTTCTATCTACACTGGACTAACAATATAATTATAACTGTCCAACCATGCCCTACACCTTATTCCCTACAAATccactgcagtgcattgtgggactTCATAAGTGCACTTGATATTTCTTCACTTGTTTCCTCAGGCATAGCTACAAAACAGAACCCAAGCCCCCCAATACACTGCACCTATTAGTGAACAGTGTGCAGTTTCAGACATGTGAGACTATTGCAAAGGAACATTTCCTCCAGTTTCTACCAAACCGcaacaacagaaaaagaaataggCAAGAAGGCACTCAGAATCACTTCCTTTTTCCTTTGAGGCTGTACATTCAGATAAACAACATTTGTGGCATTTTTCTGGCACCAGTTAACTTCTGAAACTTTTTTGCCATTAagctttaaatttattattttttttaaacatttttgtggaatcaattccatttttaaaattttttttttaaaattcagttcaGGTCCTGGAGTTCTCATAACCAGAACTGCTTCCTTATTTTCTCGGATTGAACCAGATGTATAAATTCTTTTGAACTGCAGCTGTAAGACATTTTGTAGAATATTTATTCCTGTGTGTCATGATAGATATATTAACGTACTAGCATTGCAATGTTTAGCGATcagtaaaacataaaacattaattgCACCTTATCATTCTAAAACTTGTCCTCTAATACTACTAGCACTACTAGCacttaaataaatcaacaaaaaatTGTATATGAAGAtgtctgaatgaaaatattaaaaatagctTTCAAAGTCCAGgctttaaataaaaaggaattttATAGAGAATTGTGCTTGGCATTGCAACATAGTGCATATCCGGTGACGAATATTGCTCAGAGTATTATTGTTAGCATGTCTGGATGTAAATAGAGAAGACTGATGTACAAAATTGGCACATAAATTgaacactattattattattattattattattactattattattattattataactgaatataatgagaaaatattctgtaaatCTTTGAAGCATATGCTGAGTAACTGACTAAAGGCCTAACTACAGGCTtgaataaatgtcaaataaatgtc
>XR_004578242.1
AGCAACTGTGGTGTCTAAGCCACAGTGAGTCAACATTCATTGCCAATGAGACTGTGTGAGGGGCCTCGGGAAGgggagacagagggaggagagatggaaaagaggggaaggagagaggaagaaagggaGAGTGAATAAGAGAGCTGAAGCATGAAGCAGCCACGATTGTAAAGTCCTCAAGACTCAACAGctaatggaaaaaatattactGATGGGATTCAGTGTTATGTGAGCAGTTCACAGCAGACGCTTCATCAGTGAAGTTCTCTCAAACCTACTTTATTCAAGACTTACAGCTTTTTATCTGACTTGCGATTATATAAGGCTTTTTGCCTATTTCTTACATAATATTCTTTTGTATTCCTAGAAATATTAAAAGATACAATGCAATgcatgaatgaaataaaaatgaaaattaaaaaaagaatatactAGATAGGTTTATTTGTGTCATCAAAAGCAgcaataaattttttattattctcattTTACTTAAATATCTTTAATTTCTCCAAAAAATCATACATCAAATCCAGCATGAATGCACAGAAATACTTGTATATGTTCTTTGCTCATATTCGATGGCAACTTTACAGACATTTTTAGTACATTTataatattcttatattttttttattgcatcatGTGTTCACTAACAATTctttacaattaaaataattaacatttcatttttgtcttcatGTTAACTTGATGATGAAACTTAAAGACGCTTCATCAACGAGTCTGCTCACCCAATTAAATAGAACCTGGTTAACAGATAATTAGATCAACATGGTTATTTCATTCTTCAACTAGGTGAAAATAACCTAGAACTAAA
>XR_004578243.1
AGCAACTGTGGTGTCTAAGCCACAGTGAGTCAACATTCATTGCCAATGAGACTGTGTGAGGGGCCTCGGGAAGgggagacagagggaggagagatggaaaagaggggaaggagagaggaagaaagggaGAGTGAATAAGAGAGCTGAAGCATGAAGCAGCCACGATTGTAAAGTCCTCAAGACTCAACAGctaatggaaaaaatattactGATGGGATTCAGTGTTATGTGAGCAGTTCACAGCAGACGCTTCATCAGTGAAGAGCCTTTTCCTGATCAAAACTTCAGTTTCACCTTTATGCCACTGCaacattttcaaacaaaaatattgaGAACCAAAAGACcacaataaattatttttaggtTAGTATTAACCTTTATTGATATTCCTTTATGTTTTTCCTCTAAAAGACTACCAACAGTTTGTTGATCTCAAAGATAAGGCATATTGTGGACCAGAGCTCcttgttttttctctgtgtgtctcacagAGAGAGGTCATAGAAATGAATGGTGCTGTATTCCACTGTCTGAGCTGCCATATTCCAAAAGTGAGTTTTCTCCAGGGTAAACATTAGCTCTTTGGAAGGTTACATAATCATGAAGCAGAAGGGAGTAAAGGATTCTTTGTGATCATGTCACATGTTCCTTCGTTCAGACCAACCAACTCATTTGTCCTTGAAGGCCAATGGCAGCAATGGAAAGTCTGTCCTCCTTCCCCTAAAGCTTTTAAAATGGGAGCAGACAGAGCAGATGGAAGTGTAGAACTGTTTCTTGAAATCAGTATTTTTGCCCCAGAAAACagatactttttcttttatttttcctgtcaGGTTTAAAAGGACCAAAGTTgagtttaataatttaatggCCAGCTACAGTATGTACTGTAGTACAGCTGAACTGAATGTCTCAGAAAACCCAGACtttttccctcaccatcctAAAAGCCCCAATAAAATGTGGCAAGAACTGCATGGAAGAAAAGTTTTTACATTAATTGCCAGGGCTGTCAGGGGTGGAACACCAGTTGGACTACGGCTTGTGTAGTGCTAATGTTTTTATGAGTGAAGTTGGAAACTGGCAGTCAATGCAGAGTTCTGGAAATGATCACAGATGATGGCCTGTGTTTTTCTAGTGCAGCTTGCATGAataaattttaagaaaaagaaaagaaataaaataaaatatctaaaagaaataaaataaattgcataGTATCATTTTACTCACATACAAAATTatgggaaaaaggaaagaataatGGAAACAGTAAGGACAAACATCTTGGGTAtatgcagaaaataaataatgttgtattaaaggaaaatagctttcattcaatttcatgtggtttaataaatgaaatgtgaaagaaTTGTAGaagacaagaaagaaaa

Function

NR:

description
PREDICTED: uncharacterized protein C21orf62 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938287.2 True 2098 mRNA 0.41 3 2801006 2805855
XM_026938295.2 False 2091 mRNA 0.41 3 2801006 2805856
XR_004578242.1 False 838 misc_RNA 0.33 3 2804548 2805863
XR_004578243.1 False 1400 misc_RNA 0.38 3 2802887 2805863

Neighbor

gene id symbol gene type direction distance location
crfb1 NA coding downstream 2004 2775840 ~ 2799002 (-)
LOC113540598 NA coding downstream 28617 2760250 ~ 2772389 (-)
LOC113541336 LOC108266841 coding downstream 40800 2745336 ~ 2760206 (-)
crfb4 LOC108266840 coding downstream 57786 2734184 ~ 2743220 (-)
LOC113545730 LOC108266839 coding downstream 68855 2714012 ~ 2732151 (-)
tyw5 tyw5,LOC107725219,LOC107728297 coding upstream 17953 2823816 ~ 2829821 (-)
c5h2orf69 c6h2orf69 coding upstream 113443 2919306 ~ 2920007 (-)
nabp1a nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000 coding upstream 122958 2928821 ~ 2953801 (-)
trnas-cga NA coding upstream 133458 2939321 ~ 2939402 (-)
cavin2a sdpr coding upstream 138411 2944274 ~ 2960366 (-)
G76325 mink1,LOC108427066 non-coding downstream 241854 2556506 ~ 2559152 (-)
G76333 NA non-coding downstream 270014 2530654 ~ 2530992 (-)
G76093 NA non-coding downstream 350057 2449719 ~ 2450949 (-)
G76060 NA non-coding downstream 500066 2300721 ~ 2300940 (-)
G76057 NA non-coding downstream 526367 2271867 ~ 2274639 (-)
LOC117597440 NA non-coding upstream 87513 2893376 ~ 2897204 (-)
G76400 stk17b non-coding upstream 108537 2914400 ~ 2917047 (-)
G76455 NA non-coding upstream 130218 2936081 ~ 2936563 (-)
G76462 NA non-coding upstream 159403 2965266 ~ 2966533 (-)
G76570 NA non-coding upstream 786955 3592818 ~ 3595411 (-)
ifngr2 NA other downstream 47200 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 736708 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 997361 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 1126433 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 1126821 1674112 ~ 1674185 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 981093 3786956 ~ 3816059 (-)
G77283 NA other upstream 2034097 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2525721 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 3433092 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 3517180 6323043 ~ 6324680 (-)

Expression


Co-expression Network