nabp1a (nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000)


Basic Information

Item Value
gene id nabp1a
gene name nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2928821 ~ 2953801 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939466.2
cccacacacacacacacacacacacacacacacacacactctctctctgcacgGTTAGCCTCAGTGCTAGCGCCGCTAGCTGCCTCTTCACCTCCCTCCTGCcgctctccccctctctccccctatctctctctctcttttttttttttgtttgtttgtttgtttttaaagcgaTGTCGAATATAAACAACGACGCCGTGATCCTGATTAAAGACGTAAAACCGGGATCTAAAAACCTGCATATCGTCTTTATAGTTTTGGAAATAGGTCGTGTGACCAAGACAAAGGACGGACACGAAGTGCGCTCCTGTAAAGTGGCGGATAAGAGCGGCAGTATCGCCATCTCCGTCTGGGATGAACTGGGCAGCCTTATCCAGCCTGGGGACATCATCCGCCTTACACGAGGCTATGCCTCTATTTGGAAGGGGTGTCTTACCTTGTACACGGGCCGAGGTGGAGATCTGCAGAAAATCGGAGAGTTCTGCATGGTGTACTCAGAAGTTCCAAACTTCAGTGAGCCAAATCCTGAGCTGCTAGCCCAAGCCAACCAGCAGAACAAAACGGGTAAAGAACAGCGTGGAAACTCCCCGCCTAACCAAAACgcacctcctcctcctgtccAAGCAGGAAATGGCACCATGCAGACGTATCCCAATAATAACGCACCCCCTCCAGCCAACTTCCCAGCTCCCGGGAGAGCGAATGGCCGTGTTCCTGGAAACGGCCCGCCGCCGGTCACTGCAGGACAGCCTGCACCTCCTAAACCGTCCGTCACCATCAGCAACGGCAGGGACCCTCGACGCGCTTCCAAGAGATGAAGCACACTCAAagcttgaatgttttttttctaaataactGCCAATCAAGAGACGCAAAGTCTAATATCACAGTGCAGTCAGCTGAGTATTGGCTTTGTCCTCTTTCACCTAGGACTGTTAGAGTAGAGTTTCTGGAGAACAGTTGAAGCAACTTGATTTTGTTTAAGATCTCCACCATGTCGTCTTCTTTAGTGCAGGTCTCGACACGTGCCCTCATCATGTGGTGTTTCAACCATCCACCCTTACTTGAACACTCGATGCACTTTCTTCGCTTAATTTATAGTGAATTGCTGTTAAAGGAATTCAGGAATGGTTAACTGCTGTTGTAAAAGCGCAGACGGAAGCCGCTGGCTGCCTTTTCTTTGTGTGGAAGGGGGTACGCCCTTCAGCCAAAAACATACCAAAAGTGACTGTGCGAAAGAGGTGATGGTTTGATTCTGACACTTAgaattatttaattagaaataaaactaGAAATTAACAAATGTTGTCAAATTAA

Function

symbol description
nabp2 Orthologous to human NABP2 (nucleic acid binding protein 2).
nabp1 Predicted to enable single-stranded DNA binding activity. Involved in double-strand break repair via homologous recombination; mitotic G2/M transition checkpoint; and response to ionizing radiation. Located in cytosol; nucleoplasm; and site of double-strand break. Part of SOSS complex.

NR:

description
SOSS complex subunit B2-like isoform X2

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0070876 SOSS complex cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939466.2 True 1317 mRNA 0.48 7 2928821 2953801

Neighbor

gene id symbol gene type direction distance location
c5h2orf69 c6h2orf69 coding downstream 8814 2919306 ~ 2920007 (-)
tyw5 tyw5,LOC107725219,LOC107728297 coding downstream 99000 2823816 ~ 2829821 (-)
crfb1 NA coding downstream 129819 2775840 ~ 2799002 (-)
LOC113540598 NA coding downstream 156432 2760250 ~ 2772389 (-)
LOC113541336 LOC108266841 coding downstream 168615 2745336 ~ 2760206 (-)
tmeff2a tmeff2,tmeff2a,LOC107670719,LOC107728299 coding upstream 14879 2968680 ~ 3060237 (-)
dnah7 dnah7 coding upstream 680191 3633992 ~ 3745382 (-)
parp14rs1 LOC108266413 coding upstream 816433 3770234 ~ 3784393 (-)
gypc NA coding upstream 938679 3892480 ~ 3923274 (-)
cntnap5a LOC108266700,LOC108425961 coding upstream 1049925 4003726 ~ 4126493 (-)
G76400 stk17b non-coding downstream 11774 2914400 ~ 2917047 (-)
LOC117597440 NA non-coding downstream 31617 2893376 ~ 2897204 (-)
G76325 mink1,LOC108427066 non-coding downstream 369669 2556506 ~ 2559152 (-)
G76333 NA non-coding downstream 397829 2530654 ~ 2530992 (-)
G76093 NA non-coding downstream 477872 2449719 ~ 2450949 (-)
G76462 NA non-coding upstream 11465 2965266 ~ 2966533 (-)
G76570 NA non-coding upstream 639017 3592818 ~ 3595411 (-)
G76658 NA non-coding upstream 897595 3851396 ~ 3852207 (-)
G76682 NA non-coding upstream 983993 3937794 ~ 3938000 (-)
G76688 NA non-coding upstream 1014072 3967873 ~ 3968077 (-)
LOC113541352 c6h21orf62 other downstream 122958 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 175015 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 864523 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 1125176 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 1254248 1674484 ~ 1674573 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 833155 3786956 ~ 3816059 (-)
G77283 NA other upstream 1886159 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2377783 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 3285154 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 3369242 6323043 ~ 6324680 (-)

Expression


Co-expression Network