prkra (prkra)


Basic Information

Item Value
gene id prkra
gene name prkra
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18054788 ~ 18062269 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946551.2
CAACCTCCAGGTGACGGGTTTTTGGACGCTGCAAACGCttgcacattattttattacatagtATGTCAAAATAGTTCGCCATCTGTGGTAATTGTATTAATAATGACTGAAATTGACTTGGATCTGGCAGGCCATCATGTCACTTCTGACAAAACACCAGTTCAGCTGCTTTACGAGTATGGCACTAAAACTGGCAGTGTGCCTTTTTACATGATGGAGAGAGCAGACGGAGAAGCCCACCAACCGCTCTTCATCTTTAGTGTTACCATCGGAGACATCACCTGTACAGGCCAGGGCCCCTCTAAaaaagctgccaaacaggaagctGCAATGGCGGCTTTGAAAATACTGGAGTCAGACATTGAAAATGGCCCTCAAAATCAAAGGATTGAAAATAATGGCTGTGGTGGTGAAGCAAATGACCAGCCTAATCCAGTGGGAATACTGCAGGAGCTGGCGATGCAGAGGTCATGGCGTCTTCCAGAATACATATTATGTTTAGAGGCGGGTCCAGATCATAAGAAAGAGTTTACAGTTATTTGCCGCTTGGAgacactctcagaaaaagGTAAAGGGAGCTCTAAAAAGAATGCCAGAAAAGTAGCAGCAGAAAAGATGTTGGAAAAACTACAAAGTCTCTCAGGGTCTACTGAGATTACATGGAATCCAAAACCACATGTATATTTGGAGAGTCTGAGGAACTCAGAGTTAGAGAAGATTTCGTTACTGAGGAGGAATCCCCTCAGTATTCCCAACACGGACTACGTACAAATGATGCTGGAGTTATCTCAGGAGCAGGGCTTTGAGGTCACGTATTTTGACATAGaTGAACTTACAGTAAATGGGCAGTACCAGTGTTTGGCTGAGCTGTCCACCATGCCAGTTACTGTATGTCATGGTACAGGAATCTCCTGCAGTAATGCACACAATGATGCAGCTCACAGTGCTCTGCAGTACATTAAGATCATGGCCTGCACCAAATAATCACCAGCTAAACCTTCTAGTCCATACTGCATAGATAAGCTTTAAATTAACCATCATGAACAAATTGGATCATGTCTGAAAGTGTGCTCTGACCTATATCTTACAGTTGGCTGCAACTACAGACATTTGTTTAAGCTATGAAGACAATTACTCATTGAgagatattatttatttattcctgatGGGTGTGTGACATTTAGGCATCATAGAATGCTATACAAAaatgaagatgtgtgtgtgtgtgtcagtgtcagtcaGTTCTGACTATAGTATGTAATGTTCCTCATCATAGCCTCAAAGCCAGCTATTTTATTGACCAGTTGCTCACAATCTAGAAACAGAACACTGTATAAACACCATCTGATTTCTTCACAAGATTTCAGGGTTTGTAAAATGTTACCCAGGCTTTACTTGAGCTGGGAGGCAAAAATGAGGAAATTTGGATAGAGAAAAGAAGTATTTTATAAAGTGTGCTGTTAATGAAggatttatatttttccttgacatttgtatgtgaaaatagaacatgtgaaacatgcggtgaaaatataatttgaaatCATTGTTTTGAa
>XM_026946559.2
ATTAAAACAGACactctctgattggttacaaCCTCAGACACGCCTCCAACCTCCAGCTTGGATCTGGCAGGCCATCATGTCACTTCTGACAAAACACCAGTTCAGCTGCTTTACGAGTATGGCACTAAAACTGGCAGTGTGCCTTTTTACATGATGGAGAGAGCAGACGGAGAAGCCCACCAACCGCTCTTCATCTTTAGTGTTACCATCGGAGACATCACCTGTACAGGCCAGGGCCCCTCTAAaaaagctgccaaacaggaagctGCAATGGCGGCTTTGAAAATACTGGAGTCAGACATTGAAAATGGCCCTCAAAATCAAAGGATTGAAAATAATGGCTGTGGTGGTGAAGCAAATGACCAGCCTAATCCAGTGGGAATACTGCAGGAGCTGGCGATGCAGAGGTCATGGCGTCTTCCAGAATACATATTATGTTTAGAGGCGGGTCCAGATCATAAGAAAGAGTTTACAGTTATTTGCCGCTTGGAgacactctcagaaaaagGTAAAGGGAGCTCTAAAAAGAATGCCAGAAAAGTAGCAGCAGAAAAGATGTTGGAAAAACTACAAAGTCTCTCAGGGTCTACTGAGATTACATGGAATCCAAAACCACATGTATATTTGGAGAGTCTGAGGAACTCAGAGTTAGAGAAGATTTCGTTACTGAGGAGGAATCCCCTCAGTATTCCCAACACGGACTACGTACAAATGATGCTGGAGTTATCTCAGGAGCAGGGCTTTGAGGTCACGTATTTTGACATAGaTGAACTTACAGTAAATGGGCAGTACCAGTGTTTGGCTGAGCTGTCCACCATGCCAGTTACTGTATGTCATGGTACAGGAATCTCCTGCAGTAATGCACACAATGATGCAGCTCACAGTGCTCTGCAGTACATTAAGATCATGGCCTGCACCAAATAATCACCAGCTAAACCTTCTAGTCCATACTGCATAGATAAGCTTTAAATTAACCATCATGAACAAATTGGATCATGTCTGAAAGTGTGCTCTGACCTATATCTTACAGTTGGCTGCAACTACAGACATTTGTTTAAGCTATGAAGACAATTACTCATTGAgagatattatttatttattcctgatGGGTGTGTGACATTTAGGCATCATAGAATGCTATACAAAaatgaagatgtgtgtgtgtgtgtcagtgtcagtcaGTTCTGACTATAGTATGTAATGTTCCTCATCATAGCCTCAAAGCCAGCTATTTTATTGACCAGTTGCTCACAATCTAGAAACAGAACACTGTATAAACACCATCTGATTTCTTCACAAGATTTCAGGGTTTGTAAAATGTTACCCAGGCTTTACTTGAGCTGGGAGGCAAAAATGAGGAAATTTGGATAGAGAAAAGAAGTATTTTATAAAGTGTGCTGTTAATGAAggatttatatttttccttgacatttgtatgtgaaaatagaacatgtgaaacatgcggtgaaaatataatttgaaatCATTGTTTTGAa

Function

symbol description
prkra Predicted to enable double-stranded RNA binding activity; enzyme activator activity; and kinase activity. Predicted to be involved in production of siRNA involved in RNA interference. Predicted to act upstream of or within gene silencing by RNA and phosphorylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in dystonia 16. Orthologous to human PRKRA (protein activator of interferon induced protein kinase EIF2AK2).

NR:

description
interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog

GO: NA

KEGG:

id description
K24540 PRKRA; interferon-inducible double-stranded RNA-dependent protein kinase activator A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946551.2 True 1556 mRNA 0.41 8 18054788 18062223
XM_026946559.2 False 1496 mRNA 0.41 8 18054788 18062269

Neighbor

gene id symbol gene type direction distance location
pde11a pde11a,LOC107671328,LOC107657382 coding downstream 63277 17937053 ~ 17991511 (-)
nfe2l2a nfe2l2,LOC107579917 coding downstream 157855 17881771 ~ 17896933 (-)
lnpa lnpk coding downstream 375627 17667566 ~ 17679161 (-)
atp5mc3a atp5g3,LOC108266717,LOC108424356,LOC103027531,LOC105908030 coding downstream 494715 17556819 ~ 17560073 (-)
atf2 atf2,LOC107739459,LOC107671311,LOC107657392,LOC107742976 coding downstream 498623 17529937 ~ 17556165 (-)
casp10 NA coding upstream 5959 18068228 ~ 18076322 (-)
LOC113526302 LOC108266276 coding upstream 19846 18082115 ~ 18084871 (-)
LOC113525937 adam23,LOC108267022,LOC108424345 coding upstream 26354 18088623 ~ 18114405 (-)
stk24a stk24 coding upstream 84137 18146406 ~ 18161642 (-)
slc15a1a slc15a1,LOC108239716,LOC101165016 coding upstream 100911 18163180 ~ 18174048 (-)
G84411 NA non-coding downstream 221199 17833375 ~ 17833589 (-)
LOC117597384 NA non-coding downstream 310763 17740637 ~ 17744025 (-)
G84394 NA non-coding downstream 326791 17726653 ~ 17727997 (-)
LOC117597450 NA non-coding downstream 623357 17407218 ~ 17431431 (-)
G84227 NA non-coding downstream 662841 17391684 ~ 17391947 (-)
G84881 NA non-coding upstream 69141 18131410 ~ 18131998 (-)
G84880 ino80d,LOC106582458 non-coding upstream 71133 18133402 ~ 18133689 (-)
G84882 LOC108266575 non-coding upstream 72567 18134836 ~ 18135614 (-)
G84883 LOC108266575,LOC108424342 non-coding upstream 73400 18135669 ~ 18137083 (-)
G84975 xirp2 non-coding upstream 478084 18540353 ~ 18555865 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 354808 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 673616 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 1014945 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1648310 16370227 ~ 16406478 (-)
G83554 NA other downstream 1833922 16219964 ~ 16220866 (-)
LOC113526313 baz2b other upstream 851118 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1380822 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 1506480 19568749 ~ 19586103 (-)
G85848 NA other upstream 2164459 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 2332202 20394471 ~ 20423244 (-)

Expression


Co-expression Network