LOC113535176


Basic Information

Item Value
gene id LOC113535176
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 4332895 ~ 4333842 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304750.1
CAACACTGCTGACCTTACTTATAACAACAGGAAGGTACATGaactttctgtttctttttttttgtcccttgCTACACCTGATGCTTCATTTGGCAGCATCTGAAATGAGCAAGCGGTCTCAAAAATGATGTTAGTTCTTCTGCTTTTCCTAGAAAAGGTTGCAGGTGATCATACGCTCACTGGACCTAACGAAGTGAAGCAATGTGCAGGCAGATCCATTCACATTGTCTGTCGCTATCATCCGTTTTACCGGGACAATGTCAAATACTGGTGCAAAGGCTACTATTTTAATTACTGCACGGTTCTCTTACGGACGGGTCAGTCTCAGCCTTTCTATGCACCTCTGCAGATAAGTGATGATAAACGAGGTGGGTTTTTCACCATCCACATGAAGAATGTTAAAACAGCGGATAGTGGATGGTACTGGTGTGCGATTGAAAGAGTCAGTCGTCACGTAAGCAAAGCCATGCAGTTAATCATATCTGCAGttttcctcGGTAACTATAGATAATTATGTATGAGAGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304750.1 True 528 mRNA 0.42 3 4332895 4333842

Neighbor

gene id symbol gene type direction distance location
sfrp2 NA coding downstream 38759 4290072 ~ 4294136 (-)
cntnap5a LOC108266700,LOC108425961 coding downstream 206402 4003726 ~ 4126493 (-)
gypc NA coding downstream 409621 3892480 ~ 3923274 (-)
parp14rs1 LOC108266413 coding downstream 548502 3770234 ~ 3784393 (-)
dnah7 dnah7 coding downstream 587513 3633992 ~ 3745382 (-)
tmem163a tmem163a,LOC108266155,LOC107725256,LOC108425930,LOC107658221,LOC107684456,LOC107555363 coding upstream 80201 4414043 ~ 4469641 (-)
map3k19 map3k19 coding upstream 171449 4505291 ~ 4515439 (-)
mmadhcb mmadhc coding upstream 314378 4648220 ~ 4655253 (-)
LOC113535278 rnd3,LOC108266936,LOC103021440,LOC108425951,LOC103141407,LOC106582403,LOC107600972 coding upstream 434719 4768561 ~ 4777472 (-)
nmi nmi coding upstream 488390 4822232 ~ 4829512 (-)
G76860 NA non-coding downstream 47072 4285623 ~ 4285823 (-)
G76858 NA non-coding downstream 48501 4283553 ~ 4284394 (-)
G76852 NA non-coding downstream 62550 4265653 ~ 4270345 (-)
G76845 NA non-coding downstream 90371 4242253 ~ 4242524 (-)
G76813 NA non-coding downstream 289699 4042934 ~ 4043196 (-)
G76899 NA non-coding upstream 24902 4358744 ~ 4361429 (-)
G77040 NA non-coding upstream 158081 4491923 ~ 4493719 (-)
G77107 NA non-coding upstream 271463 4605305 ~ 4605679 (-)
G77130 NA non-coding upstream 304505 4638347 ~ 4638551 (-)
G77291 NA non-coding upstream 519214 4853056 ~ 4879593 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 516836 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 1527032 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 1579089 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 2268597 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 2529250 1797982 ~ 1803645 (-)
G77283 NA other upstream 506118 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 997742 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 1905113 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 1989201 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 2195204 6529046 ~ 6615660 (-)

Expression


Co-expression Network