LOC117597444


Basic Information

Item Value
gene id LOC117597444
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13831796 ~ 13832700 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304898.1
agtgatgtgtgtgtgtgtgtgtgtgcgtgactGTTTCATGTATGTGGGTGGATCCGTAGTCTCTAAGAGTCTCTGTGTGCCTATAATTTATGAGATAAGATCCAGGGAGGCTACTATACACCACAGGTTTTGcttcattaaatcattttataaatcAACCCACTGGAGATTCAAAGCAAAGGCAAATATGCTAGCACCAAATCATTCAGATGTGCAGTCTCTCCTGCTCTCCTTGCTTCAGCATTATCTTAATGAAACCTGGAACTTTCCAGCAGCGCCTCTGCCTCCTGCTGCTCACCAGCCAGCTGAGCCTTTGAGTGCAGTGCCAGTTAAAGCGCAGAGCCATGGATTCATCTACATTTTACTGATGGTTGGGCTCTTCAGCTTTTTCACCTTCGGCATCATGTTCAGTTTTATCCGCTCTAAAAAGCTGGAGAACTCGCAGGATCCGTACCACCAGTATATAGCCAGAGACTGGGCGAGCGTTCTGGCTCCGTCTGCAGCCATAATGCGGGCTCTCAAAAAGGAGTCTGTGGTTATTGGAAACCCTGCAGCCTTGGAGCATCTGCCAGGCTGAAGAGGCAAGAAACTGGAGCAGTGAGTGAGCACGGATATCTGATGACTGCTAAGTGCAAACATTTTGCTTTTAAGGTGATTACAAAGTCAAATTAGCCAAAAGATTAAATTGCATATTTCTCAAAAATCACAGTATTCACTATATGACTCTTTGCATCTGAAAT

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304898.1 True 740 mRNA 0.45 2 13831796 13832700

Neighbor

gene id symbol gene type direction distance location
mab21l3 mab21l3,LOC107597583,LOC107756750,LOC107748187 coding downstream 3703 13821928 ~ 13828093 (-)
atp1a1b atp1a1,atp1a1b,LOC107656784,LOC107569141,LOC107756749 coding downstream 22351 13798037 ~ 13809445 (-)
lrp1bb lrp1b,LOC107660661,LOC107661145,LOC107746259 coding downstream 116563 13451192 ~ 13715233 (-)
si:dkey-3d4.3 LOC108266678 coding downstream 500905 13322630 ~ 13330891 (-)
inhbb inhbb,LOC103026097,LOC107596060,LOC107661134 coding downstream 510258 13313992 ~ 13321538 (-)
rcan1a rcan1,LOC108266951,LOC107748124,LOC107597484,LOC107656781,LOC107673717 coding upstream 801 13833501 ~ 13842569 (-)
si:dkey-192g7.3 NA coding upstream 380843 14213543 ~ 14223378 (-)
gabpa gabpa,LOC107756759,LOC107695462,LOC107595806 coding upstream 414769 14247469 ~ 14253293 (-)
jam2b LOC108266454 coding upstream 421204 14253904 ~ 14259406 (-)
tfdp1a tfdp1,tfdp1a,LOC108266453,LOC108426071,LOC107748134,LOC107597491,LOC107595816,LOC107756763 coding upstream 438788 14271488 ~ 14281637 (-)
G82055 NA non-coding downstream 476102 13354741 ~ 13355694 (-)
G82035 NA non-coding downstream 499293 13332290 ~ 13332503 (-)
G82012 NA non-coding downstream 524070 13307527 ~ 13307726 (-)
G82000 NA non-coding downstream 529539 13302054 ~ 13302257 (-)
G81995 NA non-coding downstream 531393 13299458 ~ 13300403 (-)
LOC113523953 NA non-coding upstream 53947 13886647 ~ 13889526 (-)
LOC113526249 NA non-coding upstream 84403 13917103 ~ 13919206 (-)
LOC113526223 NA non-coding upstream 111107 13943807 ~ 13951833 (-)
G82604 NA non-coding upstream 461237 14293937 ~ 14295810 (-)
LOC117597393 NA non-coding upstream 508338 14341038 ~ 14353940 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other downstream 581248 13191714 ~ 13250548 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other downstream 1103759 12713065 ~ 12728037 (-)
irs2b irs2 other downstream 1324108 12482661 ~ 12507688 (-)
mphosph8 mphosph8,LOC107658258 other downstream 2371471 11450212 ~ 11460325 (-)
LOC113546407 NA other downstream 2528952 11297868 ~ 11302844 (-)
med14 med14,LOC107756768 other upstream 706168 14538868 ~ 14553495 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other upstream 994975 14827675 ~ 14837409 (-)
dcaf6 dcaf6 other upstream 1217183 15049883 ~ 15077216 (-)
LOC117597380 NA other upstream 1274249 15106949 ~ 15114695 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 2111040 15943740 ~ 15973914 (-)

Expression


Co-expression Network