LOC113526223


Basic Information

Item Value
gene id LOC113526223
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13943807 ~ 13951833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578250.1
GTAGCTGTGGTGGCTCCTGGATTGATGGTAGATTTGGATGCTGGATGTAGTATATCcaggtatttatttaataaatatttgcatAGACTCtgtaatgacaaaaaataaagaatgctaaaaacaaaaaaacatcagaagTGTTTCATCGCTTAACCATGGCACCATCTTGGGAAGCTAACAACATGTGTTGAAAAAGGAAGTAAAAAAGACTGGAGAATCACAAAAGTCATGCTCCTCTGAGCTCCTTGCACATAATAACTGTGACAGACACTTCAGCGGGATGGTGGACACTGTATGGGAAAGTGAAGAGAACACACTCGACAGTGAGAAGTTCTCACTGGGATTCAGTCTCAACTCTTCTTTCAGGGACACAGCTCATTAACAGCTCATTAAAAATATCTACCACTAAGTCCTTCAACGACCAATCAGGTTTAGGAGGTGACATGCTTAGGAGGTGCCTGCtgatgtttttgtaaaattaataagaTTCTAATATAGTGCAGATGTCTAAATGGTTCAGCTGCAAATAAGCATATATAACTGtgatacagttggggtcataagtttacatatgccttgcagattctgaaaaatgttactaattaaaaaaaaaaaag
>XR_004578251.1
TGTAGCTGTGGTGGCTCCTGGATTGATGGTAGATTTGGATGCTGGATGTAGTATATCcaggtatttatttaataaatatttgcatAGACTCtgtaatgacaaaaaataaagaatgctaaaaacaaaaaaacatcagaagTGTTTCATCGCTTAACCATGGCACCATCTTGGGAAGCTAACAACATGTGTTGAAAAAGGAAGTAAAAAAGACTGGAGAATCACAAAAGTCATGTTATCAGGATAATTTACCAGCTAAGAGTGCTACTGAGGAGcgggtgaacctgaaggttaaCATGTCTTTAACTCCAACATTATGAAATGGTGTAATAAAAGTGATGAAATATGGAGTTTAGTCTTCTCAATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578250.1 True 617 lncRNA 0.37 3 13943807 13951832
XR_004578251.1 False 366 lncRNA 0.36 3 13945298 13951833

Neighbor

gene id symbol gene type direction distance location
rcan1a rcan1,LOC108266951,LOC107748124,LOC107597484,LOC107656781,LOC107673717 coding downstream 101238 13833501 ~ 13842569 (-)
LOC117597444 NA coding downstream 111107 13831796 ~ 13832700 (-)
mab21l3 mab21l3,LOC107597583,LOC107756750,LOC107748187 coding downstream 115714 13821928 ~ 13828093 (-)
atp1a1b atp1a1,atp1a1b,LOC107656784,LOC107569141,LOC107756749 coding downstream 134362 13798037 ~ 13809445 (-)
lrp1bb lrp1b,LOC107660661,LOC107661145,LOC107746259 coding downstream 228574 13451192 ~ 13715233 (-)
si:dkey-192g7.3 NA coding upstream 261710 14213543 ~ 14223378 (-)
gabpa gabpa,LOC107756759,LOC107695462,LOC107595806 coding upstream 295636 14247469 ~ 14253293 (-)
jam2b LOC108266454 coding upstream 302071 14253904 ~ 14259406 (-)
tfdp1a tfdp1,tfdp1a,LOC108266453,LOC108426071,LOC107748134,LOC107597491,LOC107595816,LOC107756763 coding upstream 319655 14271488 ~ 14281637 (-)
shox shox,LOC107597497,LOC107748138,LOC107673655,LOC107695485 coding upstream 470717 14422550 ~ 14431425 (-)
LOC113526249 NA non-coding downstream 24601 13917103 ~ 13919206 (-)
LOC113523953 NA non-coding downstream 54281 13886647 ~ 13889526 (-)
G82055 NA non-coding downstream 588113 13354741 ~ 13355694 (-)
G82035 NA non-coding downstream 611304 13332290 ~ 13332503 (-)
G82012 NA non-coding downstream 636081 13307527 ~ 13307726 (-)
G82604 NA non-coding upstream 342104 14293937 ~ 14295810 (-)
LOC117597393 NA non-coding upstream 389205 14341038 ~ 14353940 (-)
G82756 NA non-coding upstream 649912 14601745 ~ 14605015 (-)
G82757 NA non-coding upstream 722375 14674208 ~ 14729951 (-)
G82758 NA non-coding upstream 760749 14712582 ~ 14737784 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 88621 13762417 ~ 13855186 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other downstream 693259 13191714 ~ 13250548 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other downstream 1215770 12713065 ~ 12728037 (-)
irs2b irs2 other downstream 1436119 12482661 ~ 12507688 (-)
mphosph8 mphosph8,LOC107658258 other downstream 2483482 11450212 ~ 11460325 (-)
med14 med14,LOC107756768 other upstream 587035 14538868 ~ 14553495 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other upstream 875842 14827675 ~ 14837409 (-)
dcaf6 dcaf6 other upstream 1098050 15049883 ~ 15077216 (-)
LOC117597380 NA other upstream 1155116 15106949 ~ 15114695 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 1991907 15943740 ~ 15973914 (-)

Expression


Co-expression Network