LOC117597440


Basic Information

Item Value
gene id LOC117597440
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2893376 ~ 2897204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578280.1
ATGTGATCAAGATAAGTCTGTAACAACATGCAATGACGTCCTTGACATTTGGTTTTGGCTCGTTTGAGGCAGCACATGCGGCAAATGCAATAAAGCTGAAGCGATTATGTTTCAAGTCAGCCAGGTCGATTTCTGCAGTTCCAGCAATGACAAGCTCCAGTTCACGGGCATCAAACACAGAGACCAGCCGCACGTCCACAACCTGCACAGCCACGAAATGTGATTAATTTCAAATGTGGCAGCATGATATCAACACTAGTGTCATATTCGAAGGTGATGTTCTACCTCATAGAAGCCTCGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578280.1 True 303 lncRNA 0.46 3 2893376 2897204

Neighbor

gene id symbol gene type direction distance location
tyw5 tyw5,LOC107725219,LOC107728297 coding downstream 63555 2823816 ~ 2829821 (-)
crfb1 NA coding downstream 94374 2775840 ~ 2799002 (-)
LOC113540598 NA coding downstream 120987 2760250 ~ 2772389 (-)
LOC113541336 LOC108266841 coding downstream 133170 2745336 ~ 2760206 (-)
crfb4 LOC108266840 coding downstream 150156 2734184 ~ 2743220 (-)
c5h2orf69 c6h2orf69 coding upstream 22102 2919306 ~ 2920007 (-)
nabp1a nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000 coding upstream 31617 2928821 ~ 2953801 (-)
trnas-cga NA coding upstream 42117 2939321 ~ 2939402 (-)
cavin2a sdpr coding upstream 47070 2944274 ~ 2960366 (-)
tmeff2a tmeff2,tmeff2a,LOC107670719,LOC107728299 coding upstream 71476 2968680 ~ 3060237 (-)
G76325 mink1,LOC108427066 non-coding downstream 334224 2556506 ~ 2559152 (-)
G76333 NA non-coding downstream 362384 2530654 ~ 2530992 (-)
G76093 NA non-coding downstream 442427 2449719 ~ 2450949 (-)
G76060 NA non-coding downstream 592436 2300721 ~ 2300940 (-)
G76057 NA non-coding downstream 618737 2271867 ~ 2274639 (-)
G76400 stk17b non-coding upstream 17196 2914400 ~ 2917047 (-)
G76455 NA non-coding upstream 38877 2936081 ~ 2936563 (-)
G76462 NA non-coding upstream 68062 2965266 ~ 2966533 (-)
G76570 NA non-coding upstream 695614 3592818 ~ 3595411 (-)
G76658 NA non-coding upstream 954192 3851396 ~ 3852207 (-)
LOC113541352 c6h21orf62 other downstream 87513 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 139570 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 829078 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 1089731 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 1218803 1674484 ~ 1674573 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 889752 3786956 ~ 3816059 (-)
G77283 NA other upstream 1942756 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2434380 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 3341751 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 3425839 6323043 ~ 6324680 (-)

Expression


Co-expression Network