trnas-cga


Basic Information

Item Value
gene id trnas-cga
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2939321 ~ 2939402 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-cga
GTCACGGTGGCCGAGAGGTTAAGGCGTTGGACTCGAAATCCAATGGGGTTTCCCCGCACAGGTTCGAATCCTGTTCGTGACG

Function

NR:

description
hypothetical protein EH28_21818

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-cga True 82 tRNA 0.57 1 2939321 2939402

Neighbor

gene id symbol gene type direction distance location
c5h2orf69 c6h2orf69 coding downstream 19314 2919306 ~ 2920007 (-)
tyw5 tyw5,LOC107725219,LOC107728297 coding downstream 109500 2823816 ~ 2829821 (-)
crfb1 NA coding downstream 140319 2775840 ~ 2799002 (-)
LOC113540598 NA coding downstream 166932 2760250 ~ 2772389 (-)
LOC113541336 LOC108266841 coding downstream 179115 2745336 ~ 2760206 (-)
cavin2a sdpr coding upstream 4872 2944274 ~ 2960366 (-)
tmeff2a tmeff2,tmeff2a,LOC107670719,LOC107728299 coding upstream 29278 2968680 ~ 3060237 (-)
dnah7 dnah7 coding upstream 694590 3633992 ~ 3745382 (-)
parp14rs1 LOC108266413 coding upstream 830832 3770234 ~ 3784393 (-)
gypc NA coding upstream 953078 3892480 ~ 3923274 (-)
G76455 NA non-coding downstream 2758 2936081 ~ 2936563 (-)
G76400 stk17b non-coding downstream 22274 2914400 ~ 2917047 (-)
LOC117597440 NA non-coding downstream 42117 2893376 ~ 2897204 (-)
G76325 mink1,LOC108427066 non-coding downstream 380169 2556506 ~ 2559152 (-)
G76333 NA non-coding downstream 408329 2530654 ~ 2530992 (-)
G76462 NA non-coding upstream 25864 2965266 ~ 2966533 (-)
G76570 NA non-coding upstream 653416 3592818 ~ 3595411 (-)
G76658 NA non-coding upstream 911994 3851396 ~ 3852207 (-)
G76682 NA non-coding upstream 998392 3937794 ~ 3938000 (-)
G76688 NA non-coding upstream 1028471 3967873 ~ 3968077 (-)
LOC113541352 c6h21orf62 other downstream 133458 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 185515 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 875023 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 1135676 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 1264748 1674484 ~ 1674573 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 847554 3786956 ~ 3816059 (-)
G77283 NA other upstream 1900558 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2392182 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 3299553 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 3383641 6323043 ~ 6324680 (-)

Expression


Co-expression Network