trnat-agu_8


Basic Information

Item Value
gene id trnat-agu_8
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1674112 ~ 1674185 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnat-agu_8
GGCGCTGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCctgggttcgaatcccagcaGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-agu_8 True 74 tRNA 0.54 1 1674112 1674185

Neighbor

gene id symbol gene type direction distance location
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding downstream 50063 1615900 ~ 1624049 (-)
trnal-caa_7 NA coding downstream 105255 1568745 ~ 1568857 (-)
LOC113524666 LOC108271633 coding downstream 107325 1554942 ~ 1566787 (-)
si:dkey-230p4.1 LOC108271988 coding downstream 121677 1529825 ~ 1552435 (-)
trnaw-cca_4 NA coding downstream 259373 1414668 ~ 1414739 (-)
mlphb LOC108261129 coding upstream 49072 1723257 ~ 1747031 (-)
cops8 cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920 coding upstream 184077 1858262 ~ 1871493 (-)
trim63b trim63b,LOC100194566,LOC100505419 coding upstream 187968 1862153 ~ 1863790 (-)
ranbp2 LOC108261082,LOC108440489 coding upstream 275947 1950132 ~ 1986039 (-)
lims2 LOC108261084,LOC108440488,LOC105898085 coding upstream 314355 1988540 ~ 1998073 (-)
G75814 NA non-coding downstream 17264 1656373 ~ 1656848 (-)
G75740 NA non-coding downstream 206213 1467662 ~ 1467899 (-)
G75739 NA non-coding downstream 218825 1454999 ~ 1455287 (-)
G75737 NA non-coding downstream 240885 1433022 ~ 1433227 (-)
G75736 NA non-coding downstream 259935 1413842 ~ 1414177 (-)
G75875 NA non-coding upstream 48396 1722581 ~ 1722799 (-)
G75889 col6a3,LOC108262369 non-coding upstream 127087 1801272 ~ 1819183 (-)
G75880 NA non-coding upstream 175052 1849237 ~ 1873669 (-)
G75925 NA non-coding upstream 237011 1911196 ~ 1917438 (-)
G75926 NA non-coding upstream 238946 1913131 ~ 1925253 (-)
trnar-ucu_6 NA other downstream 11503 1662520 ~ 1662609 (-)
trnat-agu_7 NA other downstream 23986 1650053 ~ 1650126 (-)
trnar-ucu_5 NA other downstream 35260 1638763 ~ 1638852 (-)
trnat-agu_6 NA other downstream 35654 1638385 ~ 1638458 (-)
htr2aa NA other downstream 77633 1591955 ~ 1596479 (-)
trnar-ucu_7 NA other upstream 299 1674484 ~ 1674573 (-)
G75893 col6a3,LOC108262369,LOC106600155 other upstream 123797 1797982 ~ 1803645 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other upstream 373594 2047779 ~ 2064298 (-)
ifngr2 NA other upstream 1010323 2684508 ~ 2753806 (-)
LOC113541352 c6h21orf62 other upstream 1126821 2801006 ~ 2805863 (-)

Expression


Co-expression Network