G96421


Basic Information

Item Value
gene id G96421
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9084327 ~ 9086671 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU114448
GATTCTGTATGTGGAGCCATCCTCTTTGGGTGGGTTGTAATTTAGCTTGGTCCTAtaaatttgtaaacatggtGGGAAAAATTGAGCAATTGGTAGCATATGCATGATTacaattttgacacatttccaAGGAAAGAACGGAAAAGTGTtgtttactccaaactcacttataatCGATGTCTAAAGGCAGTTAAAACACACTTATCCAAAGCATTTTTGTATAATACTTTCCTGAATTCTTTGATCAAAGGTTTAAACCTCTATAAATGACCACCGTGCAGATGGCACTACTTTTTCAGATGAATaacattcacagggacttgtatacgAGACActtatttctatattaaaaaaaaaaaaacagaaagaaaaacatggaaTTGTTGATGTAGTGACGTTGTCTCTGacgagacatttatttagcatttacggaagtttccagtgtcagtgctttgtaacactcaacACTAAaactgtaactaagttttctgacatgggaaaaaaattaggacagagttgtttgttctgtttctcaataacatgataaacagcatttttaaaatttgacatCAAGacgtggaaaaaaaagagagatgttggtgagggaacgttagtgataacaggaactaacatgccTCGCTGACGTTACATAAGATTAAACATAACGGATAAATCATATgaaatgttattctttaataaataaaggataGTTAGcacatttctgtggtataagaggaataaaacgtgcCATTTTTGAAAAACGGTAGTGGCATCTCActaccctgttgttgattattttgctataactgCACATTCTGTCACGTTTTATACTCTACAGTGTGTGcaattacaggaaaataacacTTGCCCTAACATTTCCGTTATAAGCGAGTTTTACATAAACAGCTTTTCTGTCCCACAGGGATGCAGCTGATAGGCTACGTAAGCAGTGCATAGaaattaggttgaaaaacagGTTGTTCTTGAAGCTTAGGAGTACGTAATATGCAGGATGGGAACGTGAATAGTCGCGACAAGATATAAAGATATGAAACGTGACTAACAAACCCTGCTCCTGGAGCTCCAGTAGCCTAATAGGGTTTCTCTCCACCCTGAACTGacacacctgatccagctcaCAGCCAGTaaacagtgtgttgtgttataaTGTAACCTCAACAGGGTTAGGCAacctattttgtttttattatctcAGCTCTTATGCATCATGCCAAACCACAACAAATAGTTTTTATGTTGGTTACTGCACAAGTGCATAATCAGCTTGCATGAAACCCTTTCTTCTTCAGTGTTTATCACTGAGACTTTGTTTCTATCAAAAGCTACACCACGTGCAAGAAATCCTTCCATATGAGCCTGAAGGAAAGGTAGGGAAGTGGAGTGTTATGACACACCCTGTTGCTGCTCCAGCATGTCTTCACAAGCATGACTAAGGCCTCATGCTACAGTGTTATGCAAACCTGAGCACCACTTAGAGTGTAACACCATGTCAACACCACCATGTAGCACACTGTTATGGGAGATGTAGCCTAGATGTAGACAAGATGTAGGCAAGATGTAGTCTACATGTAGGCAAGATGTAGTCTACATGTAGGCAAGATGTAGTCTACATGTAGGCAAGGTGTAGGCAAGATGGAGTCAAGGTGTAGCCAAGATGGAGTCAAGATGGAGGCAAGATGTAGCATAGATGTAGACAAGTTGTAGTCTAGATGTAGTCTAGATGTAAGCGAGATGTAGGCGAGATGTAAGCGAGATGTAGTCAAGCTTGTGACATTTTCCTGGAAATGTCTTTCTAGTACCTGATATATGGACTTGCGGCTGCCAGGATATTTTTCTGCACAGGGATTTCTTCTCCGTCCAGGACCAAAACAGCGTCCTGAAAGCTGGCATCTTCTCTGAAGGATCGCAGGGATCTTAAAAGCTTCTGGGAATGCTGTGGATCCGAGACAACTGACCCCGGATCAGCCTCAGCTCCAGCCTCTGCCCCGGCTTTCGACATTTTCTCCAAACTAACTAACTAGAAAGAAAATTACCTATAAAACATTAACGAGGACCCATAACATGAGTAAACAATCTGGATTAAAGTGCAATTCGCGTATATTAGCTAGTGTTATAAATAGAACGAGTCGTATAATTAGTTTTTATAATCTAATTCCCCACCTATGACTTCATGCTCCGGGGAGGATTCTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114448 True 2213 lncRNA 0.39 3 9084327 9086671

Neighbor

gene id symbol gene type direction distance location
tmem243a LOC108264233 coding downstream 1718 9080039 ~ 9082609 (-)
si:ch211-233h19.2 LOC108264231,LOC108444275 coding downstream 8368 9049269 ~ 9075959 (-)
sema3d sema3d,LOC107563415 coding downstream 159057 8886228 ~ 8925270 (-)
sema3ab sema3a,sema3ab,LOC108264812,LOC107665547,LOC107672583 coding downstream 243267 8777992 ~ 8841060 (-)
sema3e sema3e,LOC107563409,LOC107559846 coding downstream 341764 8702731 ~ 8742563 (-)
plcg2 plcg2 coding upstream 47525 9134196 ~ 9161830 (-)
meak7 tldc1,LOC104945682 coding upstream 75851 9162522 ~ 9168274 (-)
zgc:56622 LOC108264227,LOC108411019 coding upstream 99709 9186380 ~ 9191072 (-)
tat tat,LOC106573680 coding upstream 106680 9193351 ~ 9201817 (-)
LOC113534306 LOC108264223 coding upstream 118674 9205345 ~ 9210930 (-)
G96220 NA non-coding downstream 321731 8754558 ~ 8762596 (-)
G96170 NA non-coding downstream 454204 8629900 ~ 8630123 (-)
G96166 NA non-coding downstream 471313 8612815 ~ 8613014 (-)
LOC113534629 NA non-coding downstream 739669 8326831 ~ 8344658 (-)
G95907 NA non-coding downstream 1000755 8080216 ~ 8083572 (-)
G96484 NA non-coding upstream 240010 9326681 ~ 9338784 (-)
G96679 NA non-coding upstream 330351 9417022 ~ 9417414 (-)
G96677 hipk2 non-coding upstream 330915 9417586 ~ 9503941 (-)
G96840 NA non-coding upstream 732716 9819387 ~ 9884455 (-)
G97054 NA non-coding upstream 984882 10071553 ~ 10095358 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 605990 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 1389900 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 1926839 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2802797 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 3297896 5713843 ~ 5786431 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 87984 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 664211 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 735562 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1180307 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1440439 10527110 ~ 10581902 (-)

Expression


Co-expression Network