cotl1 (cotl1,LOC107559813,LOC107722478)


Basic Information

Item Value
gene id cotl1
gene name cotl1,LOC107559813,LOC107722478
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9174655 ~ 9215815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU114462
TAGCAGCTGgtgtgatattagatgggagggctAAGCTATCAATAGCTCAGCAAATAAACTGTTAAGTCTcactgatgataataataataataataataataataataataatctgtaagtctctctggatgTGTTtggtaaatgctgtaaatgtaaaaaaatttaaacaaattattatgcacacacacacacacacacacatacacatacacacacacacacacacttctgtctttcttccGATGTGGTCATGATTGGTTTATCTGCTGTACTGTGCATCATCTCACACTCATCTCGAGTGCAGaccttgtttttgtgtttagtATAACAACTATAACTGGAGTTTGAGTCAAAGAGGCTCCTTTTGTTCTTGATTGGACCTGACAATGTTACATCCTCAAGTAGTGAAGTTTCTTTCAACTCATTGGTTTCTTccactttatttcttttattgttcTTCCTTATCTAAATACAGACCACTGTGTTTACGGCCTTAATCTCCCATGGAGAGAGGTGCATCACTGGATGTAtgcgtttgtgtgtatgtgtatgagtctgtgtgtttgcagacACTGCACTGTGACTCACTCGGCTCCAGGTGATTATTGGCATTTCAGACACCTTATTGCCCCAGAAAGCAGTTTCATTGTGCAGGCTGTGGTGTTGTTGCTCAACTTGACTGTGGAGCAGCCATTGCTCTGGTGTAACCTTTCTTTTAGtcatttaaattgaaataaagtcaatttttatttttatttttttcatttaaaaaaattattcagcgatttctttttttgaaaatggaAGATGTCAACAACGAAAGAAAACATGTCCTGTGCACAAACAATATGATTCATTTCAgaataaaaggt
>TU114463
TAGCAGCTGgtgtgatattagatgggagggctAAGCTATCAATAGCTCAGCAAATAAACTGTTAAGTCTcactgatgataataataataataataataataataataataatctgtaagtctctctggatgTGTTtggtaaatgctgtaaatgtaaaaaaatttaaacaaattattatgcacacacacacacacacacacatacacatacacacacacacacacacacacacacacacttctgtctttcttccGATGTGGTCATGATTGGTTTATCTGCTGTACTGTGCATCATCTCACACTCATCTCGAGTGCAGaccttgtttttgtgtttagtATAACAACTATAACTGGAGTTTGAGTCAAAGAGGCTCCTTTTGTTCTTGATTGGACCTGACAATGTTACATCCTCAAGTAGTGAAGTTTCTTTCAACTCATTGGTTTCTTccactttatttcttttattgttcTTCCTTATCTAAATACAGACCACTGTGTTTACGGCCTTAATCTCCCATGGAGAGAGGTGCATCACTGGATGTAtgcgtttgtgtgtatgtgtatgagtctgtgtgtttgcagacACTGCACTGTGACTCACTCGGCTCCAGGTGATTATTGGCATTTCAGACACCTTATTGCCCCAGAAAGCAGTTTCATTGTGCAGGCTGTGGTGTTGTTGCTCAACTTGACTGTGGAGCAGCCATTGCTCTGGTGTAACCTTTCTTTTAGtcatttaaattgaaataaagtcaatttttatttttatttttttcatttaaaaaaattattcagcgatttctttttttgaaaatggaAGATGTCAACAACGAAAGAAAACATGTCCTGTGCACAAACAATATGATTCATTTCAgaataaaaggt
>XM_026927586.2
AGGAGGTGAGCCGAGCTGCACGCGCAGAGATCAACCACATCCATTTCGACACCAGCATGACTGACAAAGATCACCAACGCCCATGAAGAGCCAGTAGGAAATGAGTGGTGTAGAGAGAGGAGCCtgctgctgagagagagagagagagagagagagagagagagagagaatccccATAGCGCCACACTGCCAGCATCgtcctgtctgtcctcctgtcgCATCGCCCTTTGCGAGATTTTACCCAGCCTTTTCTACAAGTCTTCCCTTCTCTTCTACgtttttttattccttccttttttttaaaagctcgAAATGGCAACGCGGATCGACAAAGAGGGTTGCAGGGACGCATACAACCTGGTCCGGGATGATAACACAGATATAAACTGGGCATCCTTTAAGTATGAAGGGTCAACAATTGTGCCAGCAGGACATGGGACCGATTATGAAGAATTCAAAAGCCAGTGTACAGACGACGCCCGTCTGTTTGGTTTCGTGAGGATCACAACAGGAGATGCCATGAGCAAACGGGCCAAGTTCACCCTCATCACCTGGATCGGGGAGAATGTGAGTGGACTGCAGAGGGCTAAGATTAGCACAGACAAAACACTGGTGAAAGACGTCTGTcagAACTTTGCTAAAGAGTTCATGGTGAGCGATATTCGGGAACTGGAAGAAGACTACATCCGTAATGAGCTGAAGAAGGCTGGTGGTGCCAACTACGATGCTCAGGCAGAATAGATTCTAGCAGGGTGCGCACAAAGGAATGGGGTGGGGGGTCATCCAAACTGGGTGAAAGTGTAGGGGAAACTTTTCATCTCACACTCTCCTCAAACACctatacacagacacatacatgcacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacttctgtctttcttccGATGTGGTCATGATTGGTTTATCTGCTGTACTGTGCATCATCTCACACTCATCTCGAGTGCAGaccttgtttttgtgtttagtATAACAACTATAACTGGAGTTTGAGTCAAAGAGGCTCCTTTTGTTCTTGATTGGACCTGACAATGTTACATCCTCAAGTAGTGAAGTTTCTTTCAACTCATTGGTTTCTTccactttatttcttttattgttcTTCCTTATCTAAATACAGACCACTGTGTTTACGGCCTTAATCTCCCATGGAGAGAGGTGCATCACTGGATGTAtgcgtttgtgtgtatgtgtatgagtctgtgtgtttgcagacACTGCACTGTGACTCACTCGGCTCCAGGTGATTATTGGCATTTCAGACACCTTATTGCCCCAGAAAGCAGTTTCATTGTGCAGGCTGTGGTGTTGTTGCTCAACTTGACTGTGGAGCAGCCATTGCTCTGGTGTAACCTTTCTTTTAGtcatttaaattgaaataaagtcaatttttatttttatttttttcatttaaaaaaattattcagcgatttctttttttgaaaatggaAGATGTCAACAACGAAAGAAAACATGTCCTGTGCACAAACAATATGATTCATTTCAgaataaaaggtttttttttt

Function

symbol description
cotl1 Predicted to enable actin filament binding activity. Predicted to be involved in regulation of actin filament polymerization. Predicted to be active in cortical actin cytoskeleton and plasma membrane. Predicted to colocalize with actin filament. Is expressed in blood; epidermis; and periderm. Orthologous to human COTL1 (coactosin like F-actin binding protein 1).

NR:

description
PREDICTED: coactosin-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114462 False 872 lncRNA 0.36 2 9174664 9215815
TU114463 False 884 lncRNA 0.36 2 9174664 9215815
XM_026927586.2 True 1579 mRNA 0.44 4 9174655 9180225

Neighbor

gene id symbol gene type direction distance location
meak7 tldc1,LOC104945682 coding downstream 6381 9162522 ~ 9168274 (-)
plcg2 plcg2 coding downstream 12825 9134196 ~ 9161830 (-)
tmem243a LOC108264233 coding downstream 92046 9080039 ~ 9082609 (-)
si:ch211-233h19.2 LOC108264231,LOC108444275 coding downstream 98696 9049269 ~ 9075959 (-)
sema3d sema3d,LOC107563415 coding downstream 249385 8886228 ~ 8925270 (-)
LOC113534316 LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 coding upstream 1429 9217244 ~ 9220204 (-)
tbxas1 tbxas1 coding upstream 134076 9349891 ~ 9414387 (-)
fgd4a fgd4 coding upstream 409248 9625063 ~ 9692085 (-)
bicd1a bicd1,LOC107722484 coding upstream 478262 9694077 ~ 9732778 (-)
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding upstream 781998 9997813 ~ 10018683 (-)
G96421 NA non-coding downstream 87984 9084327 ~ 9086671 (-)
G96220 NA non-coding downstream 412059 8754558 ~ 8762596 (-)
G96170 NA non-coding downstream 544532 8629900 ~ 8630123 (-)
G96166 NA non-coding downstream 561641 8612815 ~ 8613014 (-)
LOC113534629 NA non-coding downstream 829997 8326831 ~ 8344658 (-)
G96484 NA non-coding upstream 110866 9326681 ~ 9338784 (-)
G96679 NA non-coding upstream 201207 9417022 ~ 9417414 (-)
G96677 hipk2 non-coding upstream 201771 9417586 ~ 9503941 (-)
G96840 NA non-coding upstream 603572 9819387 ~ 9884455 (-)
G97054 NA non-coding upstream 855738 10071553 ~ 10095358 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 696318 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 1480228 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 2017167 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2893125 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 3388224 5713843 ~ 5786431 (-)
LOC113534661 NA other upstream 535067 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 606418 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1051163 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1311295 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 1956872 11172687 ~ 11179608 (-)

Expression


Co-expression Network