G97172


Basic Information

Item Value
gene id G97172
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 10369263 ~ 10370417 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU115308
GCAGTTTAAAGTCTTTGCCAGACATTCAAGTGAAAAGGAATCTCCATTATCTTAATGTGAGGCTGTGAAATCATGCACCAGGCTTTGGGGAATGTTCAGGCTAGACAATGCTTTAGAATTGAAAAAGATGCACTTTTTTAGGTAATAGTGTCCTACTATGGGATTCAGTAgagagtgaaaataaaatgacacagGTTATGAAGAACACTAGGAGAGGGTGCAGCAGTGACACTATTATGGTCCGTGATAAATCCTCAGATTGTGAAATTTCTCTTGGGTTGTTTGGATTGTTAAAAGCTGTTTAAACAGGTTACACTTGTAACTAGAGGCAATATGACAgtaatatcatatcatatcatatcatatcatatcacattATATGGTGCTTTAAGGGTTTCCCCTAGATGGACAAACTGgatgaaactttttttcccccaagagtATATCGACTGATAGTTTGgtattatattgaaaatgtaaatggGATTTGTACAATCCTagtaaaatcttttaaatacaGATGCTTCTTTCGGGTTGTAATTTCTTTTGACATCTGAAGCAAAATGTGAACTTCACCCCTGGAATCCAAAAAATCTGAGCTGATGCACAGAATGATCTCCACCTTCCTGATGCCTTGTGGACTATCTTGGGTTTGGATTTGCATCTGATTTAAATTAGGCTAACTTTACAGAGAAGTTTATCAGAGCACTTGTAGACTAATGCTTCATCTTTGAGTGCACAGCTTTCTCTGGGTGTTTACCACTGCATGCTATCTGCCCGTCATATCAGAGATAGGAATTTTGCATGAATTTGCACGCAGCTCCCAGTTCCAGTGCTCCGCACAATTCCAGTCTCTAGACATTCTTGATAGACGCAAATGATGTAATCTCTGCATACTTTTCAGTCCAGGAGTGTGCTGCATGTGCTAGCATTTGCATTCGGAATAGAGGCTTGGACCTTGGACTGTAATGAGCAGTCGGTGCTGTCATTCTGGAGGCCTATCATGAATTAGTTTTTGAACGTGCAGTGCCGGGTCTCGAATTTCTgcagcttgtttgtgtgtgggctTCTGAAGAGTCAGGGAACTTGCAGTGTATCACTGTCACAAGACGAGGctctccagtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115308 True 1135 lncRNA 0.40 2 10369263 10370417

Neighbor

gene id symbol gene type direction distance location
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding downstream 350580 9997813 ~ 10018683 (-)
bicd1a bicd1,LOC107722484 coding downstream 636485 9694077 ~ 9732778 (-)
fgd4a fgd4 coding downstream 677178 9625063 ~ 9692085 (-)
tbxas1 tbxas1 coding downstream 954876 9349891 ~ 9414387 (-)
LOC113534316 LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 coding downstream 1149059 9217244 ~ 9220204 (-)
wfdc1 wfdc1,LOC102778323,LOC107553961 coding upstream 55323 10425740 ~ 10439871 (-)
si:dkey-246g23.4 NA coding upstream 78569 10448986 ~ 10453158 (-)
kcng4a kcng4,kcng4a,LOC107553964,LOC107738382,LOC107749318,LOC107670163,LOC107684667 coding upstream 106769 10477186 ~ 10505123 (-)
zgc:173742 zgc:173742,LOC108264272,LOC108415671,LOC107684664,LOC107749320,LOC107553995 coding upstream 216505 10586922 ~ 10642050 (-)
cdh13 cdh13,LOC107684661,LOC107722459,LOC107738387 coding upstream 336454 10706871 ~ 11042272 (-)
G97054 NA non-coding downstream 273905 10071553 ~ 10095358 (-)
G96840 NA non-coding downstream 484808 9819387 ~ 9884455 (-)
G96677 hipk2 non-coding downstream 865322 9417586 ~ 9503941 (-)
G96679 NA non-coding downstream 951849 9417022 ~ 9417414 (-)
G96484 NA non-coding downstream 1030479 9326681 ~ 9338784 (-)
G97173 NA non-coding upstream 331 10370748 ~ 10371325 (-)
G97204 NA non-coding upstream 108650 10479067 ~ 10479287 (-)
G97224 NA non-coding upstream 148680 10519097 ~ 10519305 (-)
G97225 NA non-coding upstream 150378 10520795 ~ 10520997 (-)
G97246 mlycd non-coding upstream 286775 10657192 ~ 10661052 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 74440 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 450782 9822233 ~ 9918481 (-)
LOC113534661 NA other downstream 597243 9750882 ~ 9772020 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other downstream 1153448 9174655 ~ 9215815 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 1890926 8395812 ~ 8478337 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 156693 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 802270 11172687 ~ 11179608 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 1215640 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 1382108 11752525 ~ 11769986 (-)
sspn sspn other upstream 1500491 11870908 ~ 11878204 (-)

Expression


Co-expression Network