G97224


Basic Information

Item Value
gene id G97224
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 10519097 ~ 10519305 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU115367
AACACAACCTTAATAGTGTTCACATGAGTAAATTGCTTGTAAAATGCAATTTCATGTCACAAAATCATGGTGAAAGCAATCCAATCATTGTTATTCctgtgtctttttctcttctacTCAGTGTCATTGTTCATGTCCTTTTACTAAAGTCAGTGGCTTCTGTGTTCCCCAGGCGAGATTTCAAACCACCCAGTGAATGGTAAACCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115367 True 209 lncRNA 0.38 1 10519097 10519305

Neighbor

gene id symbol gene type direction distance location
kcng4a kcng4,kcng4a,LOC107553964,LOC107738382,LOC107749318,LOC107670163,LOC107684667 coding downstream 13974 10477186 ~ 10505123 (-)
si:dkey-246g23.4 NA coding downstream 65939 10448986 ~ 10453158 (-)
wfdc1 wfdc1,LOC102778323,LOC107553961 coding downstream 79226 10425740 ~ 10439871 (-)
mical3a mical3a,LOC108264267,LOC108414616,LOC107673136,LOC107559327 coding downstream 120222 10295851 ~ 10398875 (-)
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding downstream 500414 9997813 ~ 10018683 (-)
zgc:173742 zgc:173742,LOC108264272,LOC108415671,LOC107684664,LOC107749320,LOC107553995 coding upstream 67617 10586922 ~ 10642050 (-)
cdh13 cdh13,LOC107684661,LOC107722459,LOC107738387 coding upstream 187566 10706871 ~ 11042272 (-)
si:dkey-238o13.4 pecr,LOC108263951,LOC108425018,LOC107553987,LOC107670155,LOC107684673,LOC107583841,LOC107749293 coding upstream 650497 11169802 ~ 11172027 (-)
tshz3a LOC108263930 coding upstream 686344 11205649 ~ 11217476 (-)
mtss1la LOC108264558,LOC108416831,LOC107749287 coding upstream 706245 11225550 ~ 11252652 (-)
G97204 NA non-coding downstream 39810 10479067 ~ 10479287 (-)
G97173 NA non-coding downstream 147772 10370748 ~ 10371325 (-)
G97172 NA non-coding downstream 148680 10369263 ~ 10370417 (-)
G97054 NA non-coding downstream 423739 10071553 ~ 10095358 (-)
G96840 NA non-coding downstream 634642 9819387 ~ 9884455 (-)
G97225 NA non-coding upstream 1490 10520795 ~ 10520997 (-)
G97246 mlycd non-coding upstream 137887 10657192 ~ 10661052 (-)
G97601 NA non-coding upstream 668190 11187495 ~ 11188023 (-)
G97607 NA non-coding upstream 671336 11190641 ~ 11190840 (-)
G97831 NA non-coding upstream 876811 11396116 ~ 11477114 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 224274 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 600616 9822233 ~ 9918481 (-)
LOC113534661 NA other downstream 747077 9750882 ~ 9772020 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other downstream 1303282 9174655 ~ 9215815 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 2040760 8395812 ~ 8478337 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 7805 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 653382 11172687 ~ 11179608 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 1066752 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 1233220 11752525 ~ 11769986 (-)
sspn sspn other upstream 1351603 11870908 ~ 11878204 (-)

Expression


Co-expression Network